[1] "2025-04-29 16:49:47 MDT" [1] "1207" "120712" "d194" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120712a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:49:51 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.754, ave o2scale2 = 0.761" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.754, ave o2scale2 = 0.761" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:49:51 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:49:51 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:50:12 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:50:13 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1436 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:50:28 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -450.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.4" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.42 O2 = -582.4" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.28 O2 = -550.8" [1] "Nominal linear calibrations:" [1] "co2scl = 0.964 co2off = 396.21 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 205 214 0.1432153 0.1494747 0.1470405 2 9.385070 -35.66987 4 2 215 224 0.1501701 0.1564295 0.1539954 2 -22.802320 117.95869 7 2 505 514 0.3518622 0.3581211 0.3556870 2 -22.810156 120.26182 8 4 515 524 0.3588164 0.3650760 0.3626418 2 9.348500 -31.43215 9 5 525 534 0.3657711 0.3720312 0.3709875 NA -2.385625 10.37631 12 4 805 814 0.5605091 0.5667684 0.5643339 2 9.387539 -36.90409 13 2 815 824 0.5674638 0.5737227 0.5712886 2 -22.769039 120.63108 16 2 1105 1114 0.7691682 0.7754279 0.7729936 3 -22.839547 120.23326 17 4 1115 1124 0.7761232 0.7823822 0.7799482 3 9.338719 -38.50881 18 3 1125 1134 0.7830781 0.7893370 0.7882940 3 -1.437914 29.91045 21 4 1405 1414 0.9778707 0.9841299 0.9816959 2 9.285398 -35.03125 22 2 1415 1424 0.9848253 0.9910849 0.9886508 2 -22.920953 119.30461 23 5 1425 1434 0.9917802 0.9980400 0.9969965 NA -2.881344 12.19511 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.327883 1.315638 -0.0001894600 0.4446773 0.001423040 2.701363 4 1.328001 1.315758 -0.0025239995 1.8324273 0.006844122 5.424464 7 1.326399 1.314061 -0.0008381391 1.3915711 0.004128381 3.732767 8 1.326114 1.313780 0.0007458638 0.3118266 0.004975386 2.896944 9 1.326055 1.313709 0.0044908312 0.6836302 0.003181981 1.339737 12 1.327869 1.315614 -0.0007228166 0.7229962 0.003244146 2.082145 13 1.327964 1.315704 -0.0024925455 1.2929111 0.007263606 4.188977 16 1.324669 1.312275 -0.0024485366 1.9545121 0.007209381 6.086371 17 1.324376 1.311972 0.0004087258 0.5162715 0.005000781 2.609004 18 1.324141 1.311735 0.0019549989 1.3199734 0.010371823 1.720147 21 1.323805 1.311342 0.0017733944 0.1871301 0.005021598 1.837589 22 1.324276 1.311831 -0.0011991082 1.4518904 0.003245834 5.049684 23 1.324381 1.311943 -0.0167775468 1.8472628 0.011888233 2.414328 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 396.314 co2l1 = 0.964 co2l0 = 0.01" [1] "co2l0 = -104.35 co2l1 = 0.23" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "190 out of 387 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "197 out of 1252 1-min values rejected as stack air" [1] "78 out of 698 Line 1 1-min values rejected as stack air" [1] "119 out of 554 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"