[1] "2025-04-29 16:49:01 MDT" [1] "1207" "120711" "d193" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120711a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:49:05 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.754, ave o2scale2 = 0.761" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "3 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.754, ave o2scale2 = 0.761" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "2 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:49:05 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:49:05 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:49:26 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:49:27 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1434 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:49:42 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -450.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.4" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.42 O2 = -582.4" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.28 O2 = -550.8" [1] "Nominal linear calibrations:" [1] "co2scl = 0.966 co2off = 396.19 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 2 143 152 0.09927211 0.1055319 0.1030977 2 -22.718656 119.452423 4 4 153 162 0.10622726 0.1124865 0.1100525 2 9.399391 -34.866506 5 5 163 172 0.11318189 0.1194417 0.1183986 NA -2.282437 9.529334 8 4 443 452 0.30796644 0.3142258 0.3117915 2 9.421508 -34.400434 9 2 453 462 0.31492245 0.3211817 0.3187474 2 -22.703063 121.819076 12 2 743 752 0.51675324 0.5230153 0.5205799 3 -22.705164 120.901485 13 4 753 762 0.52371181 0.5299757 0.5275393 3 9.408922 -34.838481 14 3 763 772 0.53067216 0.5369365 0.5358914 3 -1.342633 29.628180 17 4 1043 1052 0.72558105 0.7318445 0.7294084 2 9.414359 -36.634466 18 2 1053 1062 0.73254063 0.7388044 0.7363685 2 -22.721703 119.270055 19 5 1063 1072 0.73950038 0.7457625 0.7447187 NA -2.295531 9.653781 22 2 1343 1352 0.93440417 0.9406678 0.9382317 3 -22.794297 121.867311 23 4 1353 1362 0.94136406 0.9476273 0.9451914 3 9.366453 -37.665529 24 3 1363 1372 0.94832318 0.9545856 0.9535417 3 -1.414828 33.244860 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.327264 1.315089 0.0015645264 2.2908274 0.004248030 6.7001706 4 1.327197 1.315017 0.0014799984 -0.1085980 0.005429926 0.9621973 5 1.327364 1.315186 -0.0003745007 -0.6552354 0.000265165 0.9867332 8 1.327602 1.315409 0.0007304433 1.2314660 0.005041727 3.1155557 9 1.327448 1.315251 -0.0015215490 1.3742162 0.005530153 3.7684017 12 1.327443 1.315241 -0.0001462553 1.0851860 0.001541443 3.9702778 13 1.327410 1.315210 0.0008669990 0.7391157 0.006021423 3.5975723 14 1.327556 1.315343 0.0045145551 0.2940051 0.014004481 0.8792697 17 1.326855 1.314618 -0.0034090537 0.1125163 0.008654050 1.7246821 18 1.326789 1.314553 -0.0032784625 1.5112653 0.008651857 4.6352399 19 1.326420 1.314155 0.0010602470 3.6179871 0.000751301 4.7439914 22 1.324052 1.311607 -0.0016109468 1.3013538 0.004169638 3.7843157 23 1.324017 1.311573 0.0011315450 1.3414688 0.005827960 3.4602290 24 1.324097 1.311661 0.0036387970 3.4422333 0.012014163 4.5021750 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 396.251 co2l1 = 0.965 co2l0 = 0.011" [1] "co2l0 = -104.31 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "173 out of 500 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "327 out of 1217 1-min values rejected as stack air" [1] "17 out of 566 Line 1 1-min values rejected as stack air" [1] "310 out of 651 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"