[1] "2025-04-29 16:48:11 MDT" [1] "1207" "120710" "d192" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120710a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:48:15 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.754, ave o2scale2 = 0.761" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "81 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.754, ave o2scale2 = 0.761" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "81 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:48:15 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:48:15 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:48:38 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:48:39 MDT" [1] "reading in recalculated plot titles" [1] "Removed 81 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1355 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:48:56 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -450.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.4" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.42 O2 = -582.4" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.28 O2 = -550.8" [1] "Nominal linear calibrations:" [1] "co2scl = 0.968 co2off = 384.05 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.71 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 73 82 0.05597228 0.06223223 0.05979797 2 9.392961 -37.29697 4 2 83 89 0.06501398 0.06918678 0.06779595 2 -22.708175 123.42366 7 2 343 348 0.26462216 0.27088142 0.26914259 3 -22.700719 120.42155 8 4 349 358 0.27157668 0.27783594 0.27540193 3 9.380961 -36.32206 9 3 359 368 0.27853134 0.28479109 0.28374794 3 -1.350977 30.50275 12 4 623 632 0.47329638 0.47955590 0.47712195 2 9.404781 -41.66379 13 2 633 642 0.48025127 0.48651071 0.48407660 2 -22.691031 121.78222 17 2 903 912 0.68193984 0.68819907 0.68576500 3 -22.644867 116.48268 18 4 913 922 0.68889468 0.69515506 0.69272044 3 9.436398 -35.23739 19 3 923 932 0.69585046 0.70210923 0.70106620 3 -1.311516 32.12604 22 4 1199 1208 0.89058903 0.89684838 0.89441424 2 9.396523 -34.07084 23 2 1209 1218 0.89754398 0.90380324 0.90136893 2 -22.728586 120.77360 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.328311 1.316135 -1.025854e-03 1.6115775811 0.005000216 4.695381 4 1.328516 1.316320 1.685185e-04 1.2404638873 0.001753011 2.172149 7 1.328139 1.315874 -1.489112e-03 1.8850180781 0.004809523 5.890387 8 1.327898 1.315642 3.256453e-03 0.1141977907 0.009011707 2.038332 9 1.327623 1.315346 5.728590e-03 1.8791513367 0.015169796 2.541371 12 1.326536 1.314216 9.951511e-05 -0.2166445250 0.002153952 5.651663 13 1.326715 1.314383 -3.392236e-03 2.3233126724 0.010921289 6.440013 17 1.327955 1.315714 -7.228858e-04 2.5408897812 0.002446170 11.034888 18 1.327747 1.315493 3.550020e-03 -0.0005204596 0.009223656 3.714170 19 1.327764 1.315514 9.153289e-04 2.2661727095 0.007657407 2.974189 22 1.324629 1.312312 -4.554335e-04 0.8842023440 0.002180457 3.084098 23 1.324638 1.312319 -3.841635e-03 1.9049182748 0.010160538 5.614806 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 396.24 co2l1 = 0.966 co2l0 = 0.008" [1] "co2l0 = -104.13 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "280 out of 590 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "310 out of 1171 1-min values rejected as stack air" [1] "158 out of 556 Line 1 1-min values rejected as stack air" [1] "152 out of 615 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"