[1] "2025-04-29 16:45:05 MDT" [1] "1207" "120706" "d188" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120706a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:45:09 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.745, ave o2scale2 = 0.751" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "303 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.745, ave o2scale2 = 0.751" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "303 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:45:10 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:45:10 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:45:31 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:45:33 MDT" [1] "reading in recalculated plot titles" [1] "Removed 303 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1133 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:45:50 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -450.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.4" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.42 O2 = -582.4" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.28 O2 = -550.7" [1] "Nominal linear calibrations:" [1] "co2scl = 0.971 co2off = 409.4 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.01 minutes" [1] "Average Cal: 7.23 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 2 107 112 0.09123093 0.09749074 0.09575197 2 -22.722281 121.92225 4 4 113 121 0.09818634 0.10375014 0.10166368 2 9.259830 -38.37695 8 4 336 342 0.30196418 0.30613756 0.30474648 2 9.279613 -37.45827 9 2 343 349 0.30683293 0.31309219 0.31044925 2 -22.679302 118.35465 12 2 566 574 0.50852564 0.51408973 0.51200315 3 -22.652821 118.15821 13 4 575 581 0.51756713 0.52173958 0.52034863 3 9.324087 -36.24923 14 3 582 586 0.52243519 0.52521690 0.52823081 3 -1.394500 12.30598 17 4 801 806 0.71718866 0.72344774 0.72101356 2 9.342547 -40.64915 18 2 807 816 0.72414291 0.73040252 0.72796814 2 -22.640930 121.56819 22 2 1041 1050 0.92585069 0.93211001 0.92967590 3 -22.684148 118.34043 23 4 1051 1055 0.93628319 0.93906487 0.93836937 3 9.321688 -32.11686 24 3 1056 1065 0.93976045 0.94601968 0.94497657 3 -1.404023 34.34826 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.344118 1.333068 0.0007467464 1.7883360 0.002380750 5.719015 4 1.344025 1.332983 0.0040027895 -0.5924761 0.011080418 2.525304 8 1.342582 1.331497 -0.0031761164 -1.2211373 0.005615165 2.428668 9 1.342574 1.331474 -0.0004106182 0.4382309 0.003465443 2.168471 12 1.342323 1.331266 -0.0013262327 2.1383982 0.003563857 4.802631 13 1.342305 1.331269 -0.0022342627 2.1002769 0.003944834 3.516048 14 1.342260 1.331204 0.0079574106 0.4059728 0.008433332 5.014540 17 1.342191 1.331157 -0.0015728506 1.4545785 0.005698907 5.210075 18 1.342314 1.331278 -0.0050937331 1.9338980 0.012647012 5.504200 22 1.340046 1.328946 -0.0028224269 1.2170351 0.007726414 5.229511 23 1.339910 1.328768 0.0003432222 5.4981079 0.000437500 5.508847 24 1.339764 1.328634 0.0048467482 2.1806317 0.013929548 3.099721 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 396.303 co2l1 = 0.97 co2l0 = 0.015" [1] "co2l0 = -103.76 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "123 out of 592 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "469 out of 952 1-min values rejected as stack air" [1] "404 out of 452 Line 1 1-min values rejected as stack air" [1] "65 out of 500 Line 2 1-min values rejected as stack air" [1] "untarring JGOFS directory for this cruise" [1] "making html"