[1] "2025-04-29 16:44:18 MDT" [1] "1207" "120705" "d187" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120705a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:44:22 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.745, ave o2scale2 = 0.751" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "301 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.745, ave o2scale2 = 0.751" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "297 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:44:22 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:44:22 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:44:45 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:44:46 MDT" [1] "reading in recalculated plot titles" [1] "Removed 297 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1138 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:45:02 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -450.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.4" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.42 O2 = -582.4" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.28 O2 = -550.7" [1] "Nominal linear calibrations:" [1] "co2scl = 0.971 co2off = 401.28 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.01 minutes" [1] "Average Cal: 7.55 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 54 61 0.04908990 0.05395836 0.05221969 2 9.056021 -37.99818 4 2 62 67 0.05465394 0.06091337 0.05847909 2 -22.926812 120.13736 7 2 291 300 0.25635697 0.26261617 0.26018213 3 -22.867305 120.49562 8 4 301 307 0.26331236 0.26957164 0.26818055 3 9.100947 -39.56240 9 3 308 316 0.27026690 0.27583102 0.27513542 3 -1.615125 27.22543 12 4 532 539 0.46644520 0.47131366 0.46957468 2 9.118260 -35.53567 13 2 540 544 0.47200926 0.47479161 0.47409605 2 -22.858354 115.58585 14 5 545 554 0.47896415 0.48522830 0.48418396 NA -2.504344 10.52674 17 2 765 772 0.67518866 0.68005787 0.67831887 3 -22.823771 122.94987 18 4 773 778 0.68075347 0.68423058 0.68318762 3 9.165125 -43.09315 19 3 779 788 0.68770816 0.69397124 0.69292826 3 -1.532719 27.49851 22 4 1005 1011 0.88455914 0.88873252 0.88734143 2 9.205775 -37.91981 23 2 1012 1021 0.88942786 0.89568747 0.89325312 2 -22.778977 119.67637 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.345049 1.334146 -0.0017367703 -1.26371128 0.004004620 4.5591497 4 1.345176 1.334291 -0.0028572190 0.53249899 0.010774439 3.2072736 7 1.344359 1.333421 -0.0006024826 -0.24739326 0.002128264 4.3564548 8 1.343984 1.333004 0.0056003651 2.67776420 0.009201517 4.4367218 9 1.343885 1.332881 0.0078109643 3.92171274 0.018210681 3.9338678 12 1.342016 1.330919 0.0015278948 0.32231335 0.003188705 1.5463333 13 1.342116 1.330995 -0.0042743826 -0.28641839 0.005384560 0.3012348 14 1.342100 1.331032 -0.0015602896 1.76739629 0.001104854 2.9864504 17 1.343370 1.332365 -0.0011836356 0.03419925 0.002452889 0.9592999 18 1.343190 1.332190 0.0049314469 1.40355272 0.007901905 2.1861503 19 1.343188 1.332200 0.0061072828 3.61161953 0.016074985 4.7607679 22 1.342090 1.330851 -0.0023212049 -0.31548700 0.004183440 4.9244852 23 1.342143 1.330934 -0.0041000957 -0.06506803 0.010915766 3.8396453 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 396.472 co2l1 = 0.97 co2l0 = 0.009" [1] "co2l0 = -103.69 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "180 out of 650 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "470 out of 972 1-min values rejected as stack air" [1] "301 out of 445 Line 1 1-min values rejected as stack air" [1] "169 out of 527 Line 2 1-min values rejected as stack air" [1] "untarring JGOFS directory for this cruise" [1] "making html"