[1] "2025-04-29 16:43:32 MDT" [1] "1207" "120704" "d186" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120704a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:43:36 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.747, ave o2scale2 = 0.753" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "324 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.747, ave o2scale2 = 0.753" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "324 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:43:36 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:43:36 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:43:57 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:43:58 MDT" [1] "reading in recalculated plot titles" [1] "Removed 324 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1110 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:44:15 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -450.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.4" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.42 O2 = -582.4" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.28 O2 = -550.7" [1] "Nominal linear calibrations:" [1] "co2scl = 0.972 co2off = 410.13 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.51 minutes" [1] "Average Cal: 7.44 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 7 [4,] 8 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 5 13 0.004030903 0.01029008 0.007806196 3 -23.478411 118.451905 3 4 14 19 0.013767448 0.01724514 0.016201895 3 8.595812 -34.906730 4 3 20 29 0.017940509 0.02419968 0.023156583 3 -2.150914 26.745123 7 4 247 255 0.212694444 0.21825877 0.216172280 2 8.704446 -41.706119 8 2 256 263 0.221040509 0.22590856 0.224170086 2 -23.335854 124.374067 12 2 481 486 0.421362269 0.42762561 0.425885634 2 -23.191672 113.418111 13 4 487 495 0.428320978 0.43458018 0.432195809 2 8.817482 -39.621224 17 4 711 716 0.630060446 0.63354505 0.632500550 2 8.930141 -36.227797 18 2 717 726 0.637022020 0.64328241 0.640847682 2 -23.049328 119.646525 21 2 933 938 0.841751534 0.84522917 0.844185764 2 -22.978688 118.409200 22 4 939 944 0.845924740 0.84940168 0.848358507 2 9.002406 -43.960017 23 5 945 954 0.852879138 0.85913796 0.858094929 NA -2.622156 7.351956 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.334236 1.322827 0.0010123694 1.0731730 0.003468442 4.404807 3 1.334372 1.322926 -0.0034071987 -0.5751207 0.004525104 1.482466 4 1.334327 1.322884 0.0087953830 5.3656600 0.022498560 6.954962 7 1.335117 1.323713 -0.0003187317 -0.7996937 0.002170598 4.637760 8 1.335438 1.324037 -0.0018796277 1.3444061 0.003823584 3.747225 12 1.337814 1.326505 -0.0004935730 0.6217765 0.004586942 2.967912 13 1.337893 1.326600 0.0062717767 0.1080159 0.016826491 3.081723 17 1.342789 1.331762 0.0032687448 4.9202091 0.004329037 6.628527 18 1.343064 1.332055 -0.0035651756 0.4111671 0.011250930 2.557252 21 1.344256 1.333340 0.0025083195 1.6023123 0.003283085 2.564498 22 1.344155 1.333260 0.0060414220 -0.5495759 0.009770078 1.160175 23 1.344074 1.333167 -0.0026836981 0.9879365 0.001900349 2.567110 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 396.791 co2l1 = 0.969 co2l0 = 0.013" [1] "co2l0 = -103.58 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "102 out of 596 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "494 out of 926 1-min values rejected as stack air" [1] "229 out of 546 Line 1 1-min values rejected as stack air" [1] "265 out of 380 Line 2 1-min values rejected as stack air" [1] "untarring JGOFS directory for this cruise" [1] "making html"