[1] "2025-04-29 16:42:39 MDT" [1] "1207" "120702" "d184" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120702a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86165 63 [1] 86165 [1] 86165 [1] "testing skipping spike filter" [1] 86165 [1] 86165 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:42:43 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.747, ave o2scale2 = 0.753" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "490 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.747, ave o2scale2 = 0.753" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "485 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:42:44 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:42:44 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:42:59 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:43:00 MDT" [1] "reading in recalculated plot titles" [1] "Removed 485 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 431 row(s) with low FLWTA" [1] "Removed 70 row(s) with low FLSP" [1] "TEMP: 443 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:43:07 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -450.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.4" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339490 description: WT1 CO2 = 396.42 O2 = -582.4" [1] "position 6 cylinder CC339495 description: WT2 CO2 = 394.28 O2 = -550.7" [1] "Nominal linear calibrations:" [1] "co2scl = 0.969 co2off = 402.03 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.01 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 6 4 47 52 0.1888628 0.1951217 0.1940787 2 8.095359 -32.31734 7 2 53 58 0.1958171 0.2020764 0.1996423 2 -23.945516 125.78909 10 2 265 271 0.3975613 0.4038207 0.4024297 3 -23.829608 121.57345 11 4 272 277 0.4045162 0.4079935 0.4069505 3 8.203734 -39.24475 12 3 278 287 0.4114710 0.4177299 0.4166868 3 -2.499000 34.34624 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 6 1.344571 1.333236 0.0009550298 1.4997267 0.001549004 2.047162 7 1.344855 1.333524 -0.0012086160 1.5880472 0.006459081 5.627384 10 1.349422 1.338358 -0.0002043102 -2.0403959 0.003103325 3.363491 11 1.349337 1.338325 0.0084576871 -1.4121455 0.011209926 1.923464 12 1.349438 1.338448 0.0033550335 -0.7733088 0.011611167 1.094684 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 397.432 co2l1 = 0.968 co2l0 = -0.003" [1] "co2l0 = -104.61 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "71 out of 355 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "284 out of 380 1-min values rejected as stack air" [1] "105 out of 201 Line 1 1-min values rejected as stack air" [1] "179 out of 179 Line 2 1-min values rejected as stack air" [1] "untarring JGOFS directory for this cruise" [1] "making html"