[1] "2025-04-29 16:42:07 MDT" [1] "1207" "120630" "d182" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120630a.hr" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120630b.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 81956 63 [1] 81698 [1] 81698 [1] "testing skipping spike filter" [1] 81698 [1] 81698 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:42:11 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.772, ave o2scale2 = 0.78" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 3 MR FC 2 jog(s) with SP SD > 1000" [1] "561 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.772, ave o2scale2 = 0.78" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with SP SD > 1000" [1] "563 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:42:11 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:42:11 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:42:19 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:42:20 MDT" [1] "reading in recalculated plot titles" [1] "Removed 563 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 5 row(s) with low FLSP" [1] "Removed 453 row(s) with variable TFCELL" [1] "TEMP: 338 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:42:23 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -450.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.4" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339495 description: WT1 CO2 = 394.28 O2 = -550.7" [1] "position 6 cylinder CC339490 description: WT2 CO2 = 396.42 O2 = -582.4" [1] "Nominal linear calibrations:" [1] "co2scl = 0.95 co2off = 382.58 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 6.01 minutes" [1] "Average Cal: 6.3 minutes" [1] "Shortest Cal: 1.02 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 2 106 111 0.3170902 0.3205672 0.3195239 3 -24.975750 91.049527 4 4 112 121 0.3212628 0.3275231 0.3250888 3 7.729516 -71.621743 5 3 122 127 0.3282183 0.3344779 0.3348255 3 -3.251891 5.081869 7 4 253 262 0.4395169 0.4457763 0.4433419 2 7.781477 -66.608757 8 2 263 268 0.4492535 0.4527304 0.4516874 2 -24.928703 95.692001 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.299854 1.289132 0.0013479510 3.75939084 0.002106537 14.564480 4 1.299853 1.289125 0.0009359721 0.92152189 0.007395986 9.720103 5 1.299787 1.288878 -0.0019655314 20.46261038 0.003699794 14.487337 7 1.297137 1.286498 -0.0013661958 -0.04267236 0.004265719 3.208282 8 1.296987 1.286250 -0.0012296332 0.62256513 0.001597015 9.126372 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 397.978 co2l1 = 0.948 co2l0 = 0.02" [1] "co2l0 = -97.53 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "61 out of 75 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "14 out of 256 1-min values rejected as stack air" [1] "14 out of 256 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "untarring JGOFS directory for this cruise" [1] "making html"