[1] "2025-04-29 16:41:56 MDT" [1] "1207" "120629" "d181" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120629a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 44303 63 [1] 42750 [1] 42750 [1] "testing skipping spike filter" [1] 42750 [1] 42750 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:41:58 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.782, ave o2scale2 = 0.791" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 4 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 4 MR FC 2 jog(s) with SP SD > 1000" [1] "323 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.782, ave o2scale2 = 0.792" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "287 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:41:58 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:41:58 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:42:01 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:42:02 MDT" [1] "reading in recalculated plot titles" [1] "Removed 287 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 6 row(s) with low FLSP" [1] "TEMP: 385 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:42:04 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -450.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543.4" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339495 description: WT1 CO2 = 394.28 O2 = -550.7" [1] "position 6 cylinder CC339490 description: WT2 CO2 = 396.42 O2 = -582.4" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 411.35 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 5.01 minutes" [1] "Average Cal: 5.51 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 5 [4,] 6 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 3 6 0.05161603 0.05648417 0.0561365 1 8.389281 -54.59631 5 4 86 95 0.16150124 0.16776056 0.1653267 2 8.525055 -63.73493 6 2 96 99 0.17193380 0.17471565 0.1743678 2 -24.436359 99.53936 8 2 220 228 0.28668562 0.29224954 0.2901631 2 -24.315598 87.09820 9 3 229 234 0.30059494 0.30685422 0.3072020 2 -2.364219 18.06605 11 4 310 314 0.41256560 0.41604282 0.4151155 2 8.850229 -79.75763 12 2 315 320 0.42160648 0.42508385 0.4240408 2 -24.019719 86.26318 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.276771 1.261204 -0.0008114519 -7.055580e-15 0.0005745243 0.000000 5 1.275626 1.260081 -0.0012223808 -4.951340e-02 0.0056849423 2.705439 6 1.275723 1.260118 -0.0032752454 2.489692e-14 0.0023201941 0.000000 8 1.275223 1.259599 -0.0020861029 2.224071e+00 0.0048941740 5.855765 9 1.276537 1.260963 0.0045561104 2.225039e+01 0.0146121293 15.758313 11 1.283499 1.268178 0.0018544258 -1.679399e+01 0.0030253379 27.189823 12 1.283945 1.268638 0.0018349336 5.700377e-01 0.0034511094 4.870679 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 397.221 co2l1 = 0.941 co2l0 = 0" [1] "co2l0 = -98.59 co2l1 = 0.234" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "15 out of 40 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "25 out of 275 1-min values rejected as stack air" [1] "25 out of 275 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "untarring JGOFS directory for this cruise" [1] "making html"