[1] "2025-04-29 16:39:46 MDT" [1] "1206" "120624" "d176" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120624a.hr" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120624b.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85990 63 [1] 85990 [1] 85990 [1] "testing skipping spike filter" [1] 85990 [1] 85990 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:39:50 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.777, ave o2scale2 = 0.785" [1] "Removing 193 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 185 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 185 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 192 MR FC 2 jog(s) with SP SD > 1000" [1] "891 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.777, ave o2scale2 = 0.785" [1] "Removing 193 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 184 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 184 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 194 RC FC 2 jog(s) with SP SD > 1000" [1] "888 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:39:50 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:39:50 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:40:03 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:40:05 MDT" [1] "reading in recalculated plot titles" [1] "Removed 888 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 540 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:40:12 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -450.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.95 O2 = -543.4" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339495 description: WT1 CO2 = 394.28 O2 = -550.7" [1] "position 6 cylinder CC339490 description: WT2 CO2 = 396.42 O2 = -582.4" [1] "Nominal linear calibrations:" [1] "co2scl = 0.966 co2off = 377.88 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 4.01 minutes" [1] "Average Cal: 4.53 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Removed 7 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 2 [3,] 3 4 [4,] 5 6 [5,] 7 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 2 10 15 0.1434790 0.1484964 0.1474212 1 -12.85605 91.90570 5 4 45 50 0.2683864 0.2725703 0.2715245 1 19.42331 -70.65657 13 4 228 237 0.6378128 0.6440876 0.6416473 2 19.44863 -66.30002 14 2 238 244 0.6447855 0.6496637 0.6482693 2 -12.70669 94.45346 16 2 343 349 0.7637432 0.7686114 0.7669424 2 -12.65909 91.40670 17 4 350 353 0.7700023 0.7720891 0.7717413 2 19.44541 -57.83625 21 2 447 452 0.8951907 0.9014500 0.8990156 1 -12.64778 91.40723 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.276262 1.261755 -0.003166775 2.2516360 0.004323921 3.659995 5 1.280487 1.266358 0.002635173 1.4759064 0.004705862 5.804412 13 1.286888 1.273366 -0.000589161 -0.6321580 0.003977397 3.857326 14 1.286571 1.272998 -0.002335140 2.9285708 0.006168569 4.878685 16 1.287725 1.274161 -0.001139007 0.2677925 0.003121458 4.526235 17 1.287473 1.274035 0.009921378 14.7311577 0.007026874 10.433428 21 1.287440 1.274107 -0.003729035 1.2389557 0.014595635 4.744329 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 386.587 co2l1 = 0.965 co2l0 = 0" [1] "co2l0 = -98.09 co2l1 = 0.229" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "10 out of 10 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 410 1-min values rejected as stack air" [1] "0 out of 410 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"