[1] "2025-04-29 16:39:14 MDT" [1] "1206" "120623" "d175" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120623a.hr" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120623b.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84635 63 [1] 84635 [1] 84635 [1] "testing skipping spike filter" [1] 84635 [1] 84635 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:39:18 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.789, ave o2scale2 = 0.799" [1] "Removing 296 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 318 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 319 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 297 MR FC 2 jog(s) with SP SD > 1000" [1] "1087 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.789, ave o2scale2 = 0.799" [1] "Removing 300 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 320 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 322 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 299 RC FC 2 jog(s) with SP SD > 1000" [1] "1087 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:39:18 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:39:18 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:39:31 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:39:32 MDT" [1] "reading in recalculated plot titles" [1] "Removed 1087 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 323 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:39:41 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -450.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.95 O2 = -543.4" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339495 description: WT1 CO2 = 394.28 O2 = -550.7" [1] "position 6 cylinder CC339490 description: WT2 CO2 = 396.42 O2 = -582.4" [1] "Nominal linear calibrations:" [1] "co2scl = 0.959 co2off = 371.38 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 6.02 minutes" [1] "Average Cal: 5.54 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 4 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 25 28 0.2483808 0.2505300 0.2501718 1 -13.11906 84.06089 1.258228 6 4 193 199 0.7437036 0.7478859 0.7464919 2 19.30052 -65.93580 1.269779 7 2 200 205 0.7485834 0.7548584 0.7538129 2 -12.94428 84.65582 1.270129 9 4 257 263 0.8760439 0.8802257 0.8788317 1 19.32436 -74.91850 1.271409 jfcv2 co2slp o2slp co2sd o2sd 2 1.242482 0.0020599402 -2.861630 0.001502602 2.087386 6 1.254870 -0.0021977912 1.328526 0.004196492 2.687958 7 1.255232 -0.0006852120 -2.101099 0.004773380 4.033670 9 1.256607 0.0001742298 -3.710325 0.001502862 6.125822 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 386.809 co2l1 = 0.962 co2l0 = 0" [1] "co2l0 = -96.86 co2l1 = 0.237" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "4 out of 5 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "1 out of 251 1-min values rejected as stack air" [1] "1 out of 251 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"