[1] "2025-04-29 16:38:33 MDT" [1] "1206" "120622" "d174" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120622a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85680 63 [1] 85680 [1] 85680 [1] "testing skipping spike filter" [1] 85680 [1] 85680 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:38:37 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.794, ave o2scale2 = 0.805" [1] "Removing 140 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 152 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 153 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 141 MR FC 2 jog(s) with SP SD > 1000" [1] "575 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.794, ave o2scale2 = 0.805" [1] "Removing 141 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 153 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 153 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 142 RC FC 2 jog(s) with SP SD > 1000" [1] "574 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:38:37 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:38:37 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:39:00 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:39:01 MDT" [1] "reading in recalculated plot titles" [1] "Removed 574 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 852 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:39:09 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -450.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.95 O2 = -543.4" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339495 description: WT1 CO2 = 394.28 O2 = -550.7" [1] "position 6 cylinder CC339490 description: WT2 CO2 = 396.42 O2 = -582.4" [1] "Nominal linear calibrations:" [1] "co2scl = 0.955 co2off = 371.92 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.03 minutes" [1] "Average Cal: 10.72 minutes" [1] "Shortest Cal: 2.01 minutes" [1] "Longest Cal: 26.09 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 7 [4,] 9 10 [5,] 11 12 [6,] 13 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 132 142 0.1087853 0.1248143 0.1153671 3 -13.693552 91.933435 3 4 143 167 0.1276014 0.1457217 0.1376309 3 18.820128 -63.374663 4 3 168 189 0.1464178 0.1645379 0.1568281 3 7.937864 6.860228 6 4 273 282 0.2342392 0.2405122 0.2380730 2 18.837492 -63.286488 7 2 283 286 0.2412089 0.2432997 0.2429512 2 -13.627750 86.699867 9 2 418 426 0.3596694 0.3659440 0.3635531 2 -13.601692 98.144614 10 4 427 431 0.3666409 0.3729114 0.3710533 2 18.852469 -60.455137 11 5 432 441 0.3736081 0.3798784 0.3788330 NA 5.753625 -14.888825 13 4 579 585 0.4851052 0.4913764 0.4891463 2 18.893281 -64.165385 14 2 586 592 0.4920734 0.4977554 0.4958918 2 -13.563234 86.896409 16 2 726 732 0.6104423 0.6153220 0.6135110 2 -13.535956 90.837899 17 4 733 739 0.6195017 0.6236837 0.6222890 2 18.938062 -75.743669 20 4 845 849 0.9875190 0.9910023 0.9903057 1 19.043141 -71.052519 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.271552 1.255479 0.0005637588 0.19541433 0.006375014 3.6277669 3 1.270952 1.254845 0.0006826581 -0.35283912 0.008060498 4.3298616 4 1.270601 1.254346 0.0003952350 0.06505764 0.004352964 4.1705182 6 1.269744 1.253468 0.0001950849 1.20248301 0.001828421 4.9221540 7 1.270115 1.253830 -0.0107098381 -1.11283928 0.007601398 0.7898471 9 1.265583 1.249117 -0.0004247668 2.65508805 0.001898737 9.5341401 10 1.265298 1.248776 0.0019686255 -0.46866165 0.007537326 1.7960640 11 1.265068 1.248565 -0.0268980117 3.20720855 0.019091883 5.3481116 13 1.261499 1.244836 0.0004976403 0.65356250 0.001561679 2.7892004 14 1.261175 1.244429 -0.0017093035 1.55455541 0.005754446 3.8993871 16 1.257925 1.241409 -0.0004811066 -8.58898675 0.001265789 21.9443543 17 1.257923 1.241536 -0.0051557688 1.93544527 0.008507924 8.0802057 20 1.242073 1.225642 -0.0032007217 2.86704707 0.003258515 2.8762455 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 387.276 co2l1 = 0.955 co2l0 = 0.012" [1] "co2l0 = -97.44 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 662 1-min values rejected as stack air" [1] "0 out of 662 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"