[1] "2025-04-29 16:38:14 MDT" [1] "1206" "120621" "d173" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120621a.hr" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120621d.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 69685 63 [1] 69685 [1] 69685 [1] "testing skipping spike filter" [1] 69685 [1] 69685 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:38:17 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.785, ave o2scale2 = 0.795" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "306 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.785, ave o2scale2 = 0.795" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "301 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:38:17 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:38:17 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:38:24 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:38:26 MDT" [1] "reading in recalculated plot titles" [1] "Removed 301 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 3 row(s) with high TFRIDGE" [1] "TEMP: 853 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:38:29 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -450.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.95 O2 = -543.4" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339495 description: WT1 CO2 = 394.28 O2 = -550.7" [1] "position 6 cylinder CC339490 description: WT2 CO2 = 396.42 O2 = -582.4" [1] "Nominal linear calibrations:" [1] "co2scl = 0.952 co2off = 372.3 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.53 minutes" [1] "Average Cal: 6.71 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Removed 1 calibration row(s) with high SL" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 4 4 183 192 0.4175428 0.4238144 0.4213757 2 18.484148 -62.526795 5 2 193 200 0.4245115 0.4307819 0.4281115 2 -14.192865 96.575322 7 2 353 362 0.5429486 0.5492182 0.5467799 3 -14.033352 92.306261 8 4 363 372 0.5499147 0.5561850 0.5537457 3 18.580422 -58.140446 9 3 373 382 0.5568821 0.5631521 0.5621069 3 7.659219 -1.014521 14 4 547 552 0.7213674 0.7255505 0.7243306 2 18.669929 -67.053663 15 2 553 559 0.7276407 0.7318222 0.7304281 2 -13.924400 89.733425 17 2 694 698 0.8473755 0.8501637 0.8494662 3 -13.854208 84.345329 18 4 699 706 0.8529508 0.8578284 0.8560862 3 18.719719 -64.178649 19 3 707 710 0.8585253 0.8613128 0.8672361 3 7.795399 13.374095 21 4 821 829 0.9714246 0.9769989 0.9749084 2 18.769920 -62.550614 22 2 830 835 0.9783932 0.9839686 0.9829233 2 -13.775097 97.008841 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 4 1.275905 1.259467 -0.0003699185 1.87465219 0.002204130 8.896591 5 1.275814 1.259389 -0.0030787016 0.43085249 0.010097216 3.912159 7 1.275413 1.259249 -0.0014041271 -0.06292656 0.004532120 9.852380 8 1.275100 1.259114 -0.0015362229 -3.79662031 0.005199239 14.432077 9 1.275035 1.259162 0.0025515436 -0.47845790 0.007159222 2.020913 14 1.276053 1.260097 0.0015557738 1.93993168 0.002995934 3.379621 15 1.276357 1.260310 -0.0024159622 1.89580837 0.008175038 4.771464 17 1.274674 1.258399 0.0019604653 -2.14646146 0.002019759 2.263075 18 1.274515 1.258374 0.0031126015 1.76995870 0.006242840 3.743613 19 1.274136 1.257966 0.0086701333 0.80666006 0.006152934 8.664841 21 1.273689 1.257517 -0.0016394986 1.09591708 0.004504586 3.251167 22 1.274028 1.257817 -0.0055139120 -2.47091426 0.009295560 4.547305 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 387.589 co2l1 = 0.951 co2l0 = 0.023" [1] "co2l0 = -98.08 co2l1 = 0.23" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "10 out of 35 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "25 out of 656 1-min values rejected as stack air" [1] "25 out of 656 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"