[1] "2025-04-29 16:37:54 MDT" [1] "1206" "120620" "d172" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120620a.hr" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120620b.hr" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120620c.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 74847 63 [1] 74847 [1] 74847 [1] "testing skipping spike filter" [1] 74847 [1] 74847 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:37:57 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.779, ave o2scale2 = 0.788" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "148 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.779, ave o2scale2 = 0.788" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "148 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:37:57 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:37:57 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:38:05 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:38:06 MDT" [1] "reading in recalculated plot titles" [1] "Removed 148 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 6 row(s) with variable TFCELL" [1] "TEMP: 1087 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:38:09 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -450.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.95 O2 = -543.4" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339495 description: WT1 CO2 = 394.28 O2 = -550.7" [1] "position 6 cylinder CC339490 description: WT2 CO2 = 396.42 O2 = -582.4" [1] "Nominal linear calibrations:" [1] "co2scl = 0.977 co2off = 371.13 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 98.65 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 739.9 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Removed 1 calibration row(s) with high SL" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 5 5 [3,] 6 6 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 3 69 790 0.05404187 0.5678601 0.3132648 3 8.554753 5.560041 3 2 791 800 0.56857665 0.5749595 0.5724957 3 -12.617398 88.469229 4 4 801 810 0.57565512 0.5819143 0.5794800 3 19.213336 -70.201445 5 5 811 820 0.58260955 0.5888684 0.5878254 NA 6.418719 -22.860821 7 4 866 870 0.64226852 0.6478536 0.6471498 1 19.212708 -65.352874 12 4 1083 1087 0.96307222 0.9658606 0.9651639 1 19.263104 -71.330801 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.287708 1.273838 3.720018e-05 0.001084322 0.012987768 5.467027 3 1.281993 1.267786 -4.960898e-04 2.515559459 0.004233811 8.177677 4 1.281580 1.267419 2.664866e-03 0.126242291 0.007933030 2.866635 5 1.281317 1.267104 -2.465565e-02 -4.648843074 0.017456699 6.279286 7 1.279132 1.264709 1.045670e-03 2.776920265 0.001542792 2.806269 12 1.268632 1.253412 -3.924573e-03 -7.557338065 0.003954000 7.588942 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 386.588 co2l1 = 0.974 co2l0 = 0.013" [1] "co2l0 = -97.14 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "7 out of 60 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "53 out of 253 1-min values rejected as stack air" [1] "53 out of 253 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"