[1] "2025-04-29 16:37:42 MDT" [1] "1206" "120619" "d171" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120619a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 31140 63 [1] 31140 [1] 31140 [1] "testing skipping spike filter" [1] 31140 [1] 31140 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:37:44 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.774, ave o2scale2 = 0.783" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "210 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.774, ave o2scale2 = 0.783" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "207 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:37:44 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:37:44 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:37:47 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:37:48 MDT" [1] "reading in recalculated plot titles" [1] "Removed 207 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 2 row(s) with variable TFCELL" [1] "TEMP: 308 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:37:50 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -450.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.95 O2 = -543.4" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339495 description: WT1 CO2 = 394.28 O2 = -550.7" [1] "position 6 cylinder CC339490 description: WT2 CO2 = 396.42 O2 = -582.4" [1] "Nominal linear calibrations:" [1] "co2scl = 0.978 co2off = 402.15 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.03 minutes" [1] "Average Cal: 7.63 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 41 46 0.7596054 0.7658763 0.7648317 2 19.151797 -68.955006 3 2 47 56 0.7665736 0.7728457 0.7704075 2 -12.684852 87.492832 5 2 187 195 0.8845977 0.8901737 0.8880820 3 -12.683241 86.979298 6 4 196 200 0.8936589 0.8964468 0.8957502 3 19.145521 -75.716900 7 3 201 209 0.8971441 0.9027201 0.9020222 3 8.472616 -5.135713 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.294181 1.279930 4.356174e-05 -3.376897 0.0010769544 6.171522 3 1.294240 1.280002 -2.409562e-03 1.557085 0.0098972364 7.989620 5 1.291442 1.277508 -2.617252e-03 1.568420 0.0063953341 4.387290 6 1.291008 1.277097 -3.425592e-04 -3.800074 0.0008485588 3.858900 7 1.290611 1.276651 9.543785e-03 2.853030 0.0211782621 3.182161 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 386.673 co2l1 = 0.974 co2l0 = 0.024" [1] "co2l0 = -96.31 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 252 1-min values rejected as stack air" [1] "0 out of 252 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"