[1] "2025-04-29 16:35:27 MDT" [1] "1206" "120615" "d167" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/120615g.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86100 63 [1] 86100 [1] 86100 [1] "testing skipping spike filter" [1] 86100 [1] 86100 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 16:35:31 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.767, ave o2scale2 = 0.771" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "103 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.767, ave o2scale2 = 0.771" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "103 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 16:35:31 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 16:35:31 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 16:35:52 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 16:35:53 MDT" [1] "reading in recalculated plot titles" [1] "Removed 103 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1330 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 16:36:10 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -450.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.95 O2 = -543.4" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -626.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.06 O2 = -572.2" [1] "position 5 cylinder CC339495 description: WT1 CO2 = 394.28 O2 = -550.6" [1] "position 6 cylinder CC339490 description: WT2 CO2 = 396.41 O2 = -582.4" [1] "Nominal linear calibrations:" [1] "co2scl = 0.996 co2off = 377.47 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.03 minutes" [1] "Average Cal: 8.37 minutes" [1] "Shortest Cal: 3.01 minutes" [1] "Longest Cal: 11.04 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 4 [3,] 6 8 [4,] 9 10 [5,] 11 12 [6,] 13 14 [7,] 15 16 [8,] 17 18 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 6 0.001754977 0.005239323 0.004194813 3 -11.526422 86.926050 2 4 7 16 0.005935532 0.012204253 0.009765791 3 19.617477 -68.920445 3 3 17 22 0.012901157 0.016383420 0.018125188 3 9.164141 12.004289 5 4 156 164 0.125711719 0.133377662 0.131286198 1 19.628711 -71.183346 7 5 177 187 0.142432841 0.149396817 0.148003941 NA 6.182937 -17.975183 9 2 318 327 0.251095920 0.257362818 0.254925300 3 -11.527766 92.023163 10 4 328 337 0.258058970 0.264327459 0.261889739 3 19.632156 -70.095468 11 3 338 347 0.265023466 0.271291406 0.270246564 3 9.185703 -4.086776 13 4 495 504 0.376458275 0.382729716 0.380290545 2 19.614383 -71.331211 14 2 505 514 0.383426968 0.389694387 0.387257480 2 -11.572977 89.243676 16 2 665 674 0.501826418 0.508097164 0.505657986 2 -11.579930 85.264985 17 4 675 684 0.508794878 0.515062529 0.512624790 2 19.621781 -69.561356 20 4 839 848 0.627196846 0.633466001 0.631028335 2 19.620578 -62.769052 21 2 849 857 0.634865567 0.640599421 0.638449264 2 -11.578455 95.919806 23 4 1017 1020 0.763632784 0.765725434 0.765377271 2 19.600187 -75.433183 24 3 1021 1030 0.766422512 0.772695718 0.771650260 2 9.131805 -1.411129 26 4 1165 1174 0.877879051 0.884138426 0.881704210 2 19.618773 -63.857337 27 2 1175 1184 0.884834230 0.891093084 0.888659021 2 -11.619781 88.296558 28 5 1185 1194 0.891788281 0.898048148 0.897004977 NA 6.473719 -16.085013 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.317968 1.311786 -2.823725e-03 -5.7481864 3.798086e-03 10.688414 2 1.317837 1.311560 3.161883e-04 -2.0579139 5.499791e-03 8.854608 3 1.317822 1.311603 3.506784e-03 6.8383912 4.800275e-03 24.256142 5 1.317132 1.311028 -1.206833e-03 -4.9215328 3.508954e-03 12.203516 7 1.316612 1.310972 -3.045346e-02 -2.4151518 3.111678e-02 7.964415 9 1.314549 1.308146 5.849176e-04 -3.5233132 3.347732e-03 9.963120 10 1.314289 1.307857 3.575555e-04 1.0758820 6.244551e-03 6.678516 11 1.314093 1.307677 9.804825e-04 2.0386767 3.154282e-03 4.077484 13 1.309660 1.303089 -2.625259e-03 1.2029910 6.985910e-03 4.241566 14 1.309439 1.302797 -2.473015e-03 4.4823175 7.269289e-03 11.375978 16 1.303554 1.296438 9.575701e-06 2.8820221 2.279675e-03 9.178658 17 1.303244 1.296052 1.108835e-03 0.4595094 7.118653e-03 3.068819 20 1.298433 1.290871 2.523246e-05 2.2345383 4.320806e-03 5.530204 21 1.298216 1.290621 -9.104363e-04 -0.7833598 2.496799e-03 4.004071 23 1.293461 1.285731 -1.246624e-04 -3.3164980 8.838835e-05 2.351470 24 1.293106 1.285360 1.563005e-03 -0.8873769 4.464073e-03 2.353130 26 1.289420 1.281319 -4.375495e-04 1.0575825 2.153677e-03 5.882027 27 1.289376 1.281272 -6.420677e-03 0.9075308 1.800025e-02 3.034148 28 1.289028 1.280889 -3.164794e-02 3.1168834 2.240645e-02 4.097741 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 385.824 co2l1 = 0.994 co2l0 = 0.023" [1] "co2l0 = -97.14 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "35 out of 310 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "275 out of 1037 1-min values rejected as stack air" [1] "275 out of 1037 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"