[1] "2020-09-01 15:19:22 MDT"
[1] "1206"   "120607" "d159"  
[1] "reading in high rate data from /scr/raf/stephens/GO2DAT/DIRECT/120607y.hr"
[1] "reading in hr file header"
Read 27 items
[1] "Parsing HR flags"
[1] "Doing high rate calculations (mean, sd, slope, shape)"
[1] 86100    63
[1] 86100
[1] 86100
[1] "applying high-rate spike filter"
[1] "Removing 21002 HR FC 1 glitches greater than 200"
[1] "Removing 17722 HR FC 2 glitches greater than 200"
[1] "done applying high-rate spike filter"
[1] 86100
[1] 86100
[1] 86100
[1] 86100
[1] "recalculating jog averages"
[1] "recalculating jog sds"
[1] "recalculating jog slopes"
[1] "Parsing MR flags"
[1] "Calculating derived concentration values"
[1] "2020-09-01 15:19:46 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.756, ave o2scale2 = 0.76"
[1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000"
[1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000"
[1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000"
[1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000"
[1] "327 MR delta diff NA values ( most likely because WTDIFF > 200 )"
[1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.756, ave o2scale2 = 0.76"
[1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000"
[1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000"
[1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000"
[1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000"
[1] "328 RC delta diff NA values ( most likely because WTDIFF > 200 )"
[1] "2020-09-01 15:19:47 MDT"
[1] "Plotting 1-second data"
[1] "2020-09-01 15:19:47 MDT"
[1] "reading in high-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2020-09-01 15:20:06 MDT"
[1] "reading in medium-rate plot titles"
[1] "Plotting recalculated 1-minute data"
[1] "2020-09-01 15:20:08 MDT"
[1] "reading in recalculated plot titles"
[1] "Removed 328 row(s) with NAs in them ( most likely because WTDIFF > 200 )"
[1] "TEMP: 1106 0 TRUE"
[1] "Plotting O2 and CO2 concentration data"
[1] "2020-09-01 15:20:17 MDT"
[1] "Reading in cylinder log"
Read 78 records
[1] "Finding cylinder IDs"
Read 525 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 374.15 O2 = -446.6"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.77 O2 = -538.8"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.13 O2 = -621.6"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.87 O2 = -567.4"
[1] "position 5 cylinder CC339495 description: WT1 CO2 = 394.09 O2 = -545.9"
[1] "position 6 cylinder CC339490 description: WT2 CO2 = 396.23 O2 = -577.4"
[1] "Nominal linear calibrations:"
[1] "co2scl = 1  co2off = 0 o2scla = 1  o2offa = 0"
[1] "Finding cal and sample periods"
[1] "Plotting MR jog shapes"
[1] "NO CALIBRATION PERIODS"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "making html"