[1] "2017-04-05 17:36:42 MDT"
[1] "1206"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1206/120606.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1206/120607.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1206/120608.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1206/120609.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1206/120610.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1206/120611.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1206/120612.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1206/120613.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1206/120614.html"  
[10] "/net/www/docs/homes/stephens/GO2/1206/120615.html"  
[11] "/net/www/docs/homes/stephens/GO2/1206/120616.html"  
[12] "/net/www/docs/homes/stephens/GO2/1206/120617.html"  
[13] "/net/www/docs/homes/stephens/GO2/1206/120618.html"  
[14] "/net/www/docs/homes/stephens/GO2/1206/120619.html"  
[15] "/net/www/docs/homes/stephens/GO2/1206/120620.html"  
[16] "/net/www/docs/homes/stephens/GO2/1206/120621.html"  
[17] "/net/www/docs/homes/stephens/GO2/1206/120622.html"  
[18] "/net/www/docs/homes/stephens/GO2/1206/120623.html"  
[19] "/net/www/docs/homes/stephens/GO2/1206/120624.html"  
[20] "/net/www/docs/homes/stephens/GO2/1206/120625.html"  
[21] "/net/www/docs/homes/stephens/GO2/1206/lmg_1206.html"
 [1] "/net/www/docs/homes/stephens/GO2/1206/120606.html"
 [2] "/net/www/docs/homes/stephens/GO2/1206/120607.html"
 [3] "/net/www/docs/homes/stephens/GO2/1206/120608.html"
 [4] "/net/www/docs/homes/stephens/GO2/1206/120609.html"
 [5] "/net/www/docs/homes/stephens/GO2/1206/120610.html"
 [6] "/net/www/docs/homes/stephens/GO2/1206/120611.html"
 [7] "/net/www/docs/homes/stephens/GO2/1206/120612.html"
 [8] "/net/www/docs/homes/stephens/GO2/1206/120613.html"
 [9] "/net/www/docs/homes/stephens/GO2/1206/120614.html"
[10] "/net/www/docs/homes/stephens/GO2/1206/120615.html"
[11] "/net/www/docs/homes/stephens/GO2/1206/120616.html"
[12] "/net/www/docs/homes/stephens/GO2/1206/120617.html"
[13] "/net/www/docs/homes/stephens/GO2/1206/120618.html"
[14] "/net/www/docs/homes/stephens/GO2/1206/120619.html"
[15] "/net/www/docs/homes/stephens/GO2/1206/120620.html"
[16] "/net/www/docs/homes/stephens/GO2/1206/120621.html"
[17] "/net/www/docs/homes/stephens/GO2/1206/120622.html"
[18] "/net/www/docs/homes/stephens/GO2/1206/120623.html"
[19] "/net/www/docs/homes/stephens/GO2/1206/120624.html"
[20] "/net/www/docs/homes/stephens/GO2/1206/120625.html"
[1] "120606" "120625"
 [1] "120606" "120607" "120608" "120609" "120610" "120611" "120612" "120613"
 [9] "120614" "120615" "120616" "120617" "120618" "120619" "120620" "120621"
[17] "120622" "120623" "120624" "120625"
[1] "120610" "999999"
[1] "120610_mr_proc.txt, 120610_cal_periods.txt, 120610_cal_param.txt,889jogs"
[1] "120611_mr_proc.txt, 120611_cal_periods.txt, 120611_cal_param.txt,943jogs"
[1] "120612_mr_proc.txt, 120612_cal_periods.txt, 120612_cal_param.txt,1177jogs"
[1] "120613_mr_proc.txt, 120613_cal_periods.txt, 120613_cal_param.txt,913jogs"
[1] "120614_mr_proc.txt, 120614_cal_periods.txt, 120614_cal_param.txt,976jogs"
[1] "120615_mr_proc.txt, 120615_cal_periods.txt, 120615_cal_param.txt,1330jogs"
[1] "120616_mr_proc.txt, 120616_cal_periods.txt, 120616_cal_param.txt,1225jogs"
[1] "120617_mr_proc.txt, 120617_cal_periods.txt, 120617_cal_param.txt,1133jogs"
[1] "120618_mr_proc.txt, 120618_cal_periods.txt, 120618_cal_param.txt,778jogs"
[1] "120619_mr_proc.txt, 120619_cal_periods.txt, 120619_cal_param.txt,308jogs"
[1] "120620_mr_proc.txt, 120620_cal_periods.txt, 120620_cal_param.txt,1087jogs"
[1] "120621_mr_proc.txt, 120621_cal_periods.txt, 120621_cal_param.txt,853jogs"
[1] "120622_mr_proc.txt, 120622_cal_periods.txt, 120622_cal_param.txt,862jogs"
[1] "120623_mr_proc.txt, 120623_cal_periods.txt, 120623_cal_param.txt,361jogs"
[1] "120624_mr_proc.txt, 120624_cal_periods.txt, 120624_cal_param.txt,553jogs"
[1] "120625_mr_proc.txt, 120625_cal_periods.txt, 120625_cal_param.txt,568jogs"
[1] "120606" "120625" "d158"   "d177"  
[1] "Calculating derived concentration values"
[1] "2017-04-05 17:37:08 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.779, ave o2scale2 = 0.786"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-05 17:37:21 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-05 17:37:40 MDT"
[1] "2017-04-05 17:37:45 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 374.15 O2 = -456"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.77 O2 = -550"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.13 O2 = -634.2"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.87 O2 = -578.9"
[1] "position 5 cylinder CC339495 description: WT1 CO2 = 394.09 O2 = -557.1"
[1] "position 6 cylinder CC339490 description: WT2 CO2 = 396.23 O2 = -589.2"
[1] "Plotting jog shapes"
[1] "1206 Valve transient for  Line 1 after Cal = 0.26 , 0.15 , -0.02 , -0.02 , -0.01 n = 40"
[1] "1206 Valve transient for  Line 2 after Line 1 = -44.87 , -21.15 , -0.63 , 0.96 , 5.38 n = 1"
[1] "1206 Valve transient for  Line 1 after HS = -1.01 , -0.5 , 0.01 , 0.01 , 0.03 n = 17"
[1] "1206 Valve transient for  Line 1 after MS = 0.33 , 0.17 , 0 , 0 , -0.01 n = 11"
[1] "1206 Valve transient for  Line 1 after LS = -0.03 , -0.01 , 0.01 , 0.02 , 0.02 n = 1"
[1] "1206 Valve transient for  Line 1 after LT = 0.97 , 0.46 , -0.1 , -0.14 , 0.02 n = 16"
[1] "1206 Valve transient for  HS after Line 1 = 0.92 , 0.46 , 0 , 0 , 0 n = 14"
[1] "1206 Valve transient for  HS after MS = 3 , 1.51 , 0.01 , 0 , 0 n = 1"
[1] "1206 Valve transient for  HS after LS = 4.9 , 2.46 , 0.02 , 0.01 , 0.01 n = 13"
[1] "1206 Valve transient for  MS after Line 1 = -0.43 , -0.26 , -0.08 , -0.07 , -0.07 n = 1"
[1] "1206 Valve transient for  MS after LS = 1.57 , 0.77 , -0.02 , -0.01 , -0.01 n = 11"
[1] "1206 Valve transient for  LS after Line 1 = -1.53 , -0.76 , 0.01 , 0.01 , 0 n = 14"
[1] "1206 Valve transient for  LS after Line 2 = 0 , 0 , 0 , 0 , 0 n = 1"
[1] "1206 Valve transient for  LS after HS = -4.91 , -2.47 , -0.01 , 0 , 0 n = 16"
[1] "1206 Valve transient for  LT after Line 1 = 0 , 0 , NA , NA , NA n = 2"
[1] "1206 Valve transient for  LT after HS = -0.7 , -0.1 , 0.45 , 0.37 , 0.29 n = 4"
[1] "1206 Valve transient for  LT after LS = 1.24 , 0.82 , 0.41 , 0.34 , 0.27 n = 6"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "275 out of 3235 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "2960 out of 10094 1-min values rejected as stack air"
[1] "2909 out of 10043 Line 1 1-min values rejected as stack air"
[1] "51 out of 51 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1206loxy.d159"
[1] "LMG1206loxy.d160"
[1] "LMG1206loxy.d161"
[1] "LMG1206loxy.d162"
[1] "LMG1206loxy.d163"
[1] "LMG1206loxy.d165"
[1] "LMG1206loxy.d166"
[1] "LMG1206loxy.d167"
[1] "LMG1206loxy.d168"
[1] "LMG1206loxy.d173"
[1] "LMG1206loxy.d174"
[1] "LMG1206loxy.d175"
[1] "LMG1206loxy.d176"
[1] "LMG1206loxy.d177"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.9118541
 [2,] 147.5 0.3039514
 [3,] 152.5 0.3039514
 [4,] 157.5 0.3039514
 [5,] 187.5 0.0000000
 [6,] 192.5 0.3039514
 [7,] 207.5 0.6079027
 [8,] 217.5 0.9118541
 [9,] 222.5 0.6079027
[10,] 232.5 0.3039514
[11,] 242.5 0.3039514
[12,] 257.5 0.3039514
[13,] 272.5 0.3039514
[14,] 277.5 0.6079027
[15,] 287.5 0.6079027
[16,] 302.5 0.6079027
[17,] 327.5 0.6079027
[18,] 337.5 0.3039514
[19,] 342.5 0.3039514
[20,] 347.5 0.3039514
[21,] 357.5 0.3039514
[22,] 362.5 0.6079027
[23,] 367.5 0.3039514
[24,] 372.5 0.3039514
[25,] 377.5 0.3039514
[26,] 387.5 0.3039514
[27,] 407.5 0.3039514
[28,] 412.5 0.3039514
[29,] 417.5 0.0000000
[30,] 422.5 0.6079027
[31,] 432.5 0.6079027
[32,] 437.5 0.3039514
[33,] 442.5 0.3039514
[34,] 447.5 0.3039514
       [,1]      [,2]
 [1,]  92.5 0.6079027
 [2,]  97.5 0.9118541
 [3,] 127.5 0.3039514
 [4,] 142.5 0.3039514
 [5,] 162.5 0.3039514
 [6,] 187.5 0.3039514
 [7,] 197.5 0.3039514
 [8,] 217.5 0.9118541
 [9,] 232.5 0.3039514
[10,] 237.5 0.6079027
[11,] 242.5 0.6079027
[12,] 247.5 0.6079027
[13,] 252.5 0.6079027
[14,] 257.5 0.6079027
[15,] 262.5 0.3039514
[16,] 272.5 0.6079027
[17,] 277.5 0.6079027
[18,] 282.5 0.9118541
[19,] 287.5 0.6079027
[20,] 292.5 0.3039514
[21,] 297.5 0.3039514
[22,] 317.5 0.3039514
[23,] 322.5 0.6079027
[24,] 327.5 0.6079027
[25,] 332.5 0.9118541
[26,] 337.5 0.6079027
[27,] 342.5 1.2158055
[28,] 347.5 0.6079027
[29,] 352.5 0.3039514
[30,] 357.5 0.3039514
[31,] 362.5 0.6079027
[32,] 367.5 0.9118541
[33,] 372.5 0.3039514
[34,] 377.5 0.3039514
[35,] 382.5 0.3039514
[36,] 387.5 0.3039514
[37,] 422.5 0.6079027
[38,] 427.5 2.7355623
[39,] 432.5 4.2553191
[40,] 437.5 4.5592705
[41,] 442.5 1.5197568
[42,] 447.5 0.9118541
       [,1]      [,2]
 [1,]  92.5 0.3039514
 [2,] 112.5 0.0000000
 [3,] 122.5 0.3039514
 [4,] 187.5 0.3039514
 [5,] 197.5 1.2158055
 [6,] 202.5 0.3039514
 [7,] 212.5 0.6079027
 [8,] 217.5 0.9118541
 [9,] 222.5 0.6079027
[10,] 227.5 0.3039514
[11,] 237.5 0.3039514
[12,] 242.5 1.2158055
[13,] 247.5 0.6079027
[14,] 252.5 0.6079027
[15,] 257.5 0.3039514
[16,] 262.5 1.2158055
[17,] 267.5 1.2158055
[18,] 277.5 0.9118541
[19,] 282.5 0.6079027
[20,] 287.5 1.2158055
[21,] 292.5 1.2158055
[22,] 297.5 0.3039514
[23,] 307.5 0.3039514
[24,] 312.5 1.2158055
[25,] 317.5 0.6079027
[26,] 322.5 0.3039514
[27,] 327.5 0.3039514
[28,] 332.5 0.3039514
[29,] 337.5 0.6079027
[30,] 342.5 0.9118541
[31,] 347.5 1.2158055
[32,] 352.5 0.3039514
[33,] 357.5 0.6079027
[34,] 362.5 0.3039514
[35,] 367.5 0.9118541
[36,] 372.5 0.3039514
[37,] 392.5 0.3039514
[38,] 407.5 0.0000000
[39,] 427.5 0.9118541
[40,] 432.5 0.9118541
[41,] 437.5 0.3039514
[42,] 442.5 0.0000000
[43,] 447.5 0.0000000
       [,1]      [,2]
 [1,] 182.5 0.3039514
 [2,] 192.5 0.6079027
 [3,] 197.5 1.8237082
 [4,] 202.5 0.6079027
 [5,] 207.5 0.9118541
 [6,] 212.5 3.3434650
 [7,] 217.5 0.9118541
 [8,] 292.5 0.3039514
 [9,] 297.5 0.3039514
[10,] 312.5 0.9118541
[11,] 317.5 0.9118541
[12,] 322.5 0.9118541
[13,] 347.5 0.6079027
[14,] 352.5 2.7355623
[15,] 357.5 1.5197568
[16,] 362.5 2.4316109
[17,] 367.5 1.8237082
[18,] 372.5 2.7355623
[19,] 377.5 2.1276596
[20,] 382.5 0.3039514
[21,] 392.5 0.6079027
[22,] 397.5 0.3039514
[23,] 402.5 0.3039514
[1] "making cruise html"
[1] "2017-04-05 17:38:41 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"