Read 49500 records [1] "Analyzing /scr/raf/stephens/CFDAT/180612a.mr" [1] "Reading in data" Read 12375 records [1] "Approximately 55 jogs" [1] "Fixing CO2 glitches" Read 12375 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder CB10128" [1] "Position 2 Cylinder OK30769" [1] "Position 3 Cylinder OK30766" [1] "Position 4 Cylinder CB10260" [1] "Position 5 Cylinder OK30770" [1] "Position 6 Cylinder CB10144" [1] "Position 7 Cylinder CB10141" [1] "Position 8 Cylinder OK30772" [1] "Position 9 Cylinder OK30764" [1] "Position 10 Cylinder OK30768" [1] "Position 11 Cylinder OK30762" [1] "Position 12 Cylinder CC129293" [1] "Position 13 Cylinder NA" Read 13 records LIST_KNOWN: CB10128 CB10260 CB10144 CB10141 CC129293 LIST_UNKNOWN: OK30769 OK30766 OK30770 OK30772 OK30764 OK30768 OK30762 Read 171 records Read 54 records Read 536 records Read 2 items [1] "Processing jog 1 at position 1" [1] "Processing jog 2 at position 226" [1] "Processing jog 3 at position 451" [1] "Processing jog 4 at position 676" [1] "Processing jog 5 at position 901" [1] "Processing jog 6 at position 1126" [1] "Processing jog 7 at position 1351" [1] "Processing jog 8 at position 1576" [1] "Processing jog 9 at position 1801" [1] "Processing jog 10 at position 2026" [1] "Processing jog 11 at position 2251" [1] "Processing jog 12 at position 2476" [1] "Processing jog 13 at position 2701" [1] "Processing jog 14 at position 2926" [1] "Processing jog 15 at position 3151" [1] "Processing jog 16 at position 3376" [1] "Processing jog 17 at position 3601" [1] "Processing jog 18 at position 3826" [1] "Processing jog 19 at position 4051" [1] "Processing jog 20 at position 4276" [1] "Processing jog 21 at position 4501" [1] "Processing jog 22 at position 4726" [1] "Processing jog 23 at position 4951" [1] "Processing jog 24 at position 5176" [1] "Processing jog 25 at position 5401" [1] "Processing jog 26 at position 5626" [1] "Processing jog 27 at position 5851" [1] "Processing jog 28 at position 6076" [1] "Processing jog 29 at position 6301" [1] "Processing jog 30 at position 6526" [1] "Processing jog 31 at position 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "Processing jog 40 at position 8776" [1] "Processing jog 41 at position 9001" [1] "Processing jog 42 at position 9226" [1] "Processing jog 43 at position 9451" [1] "Processing jog 44 at position 9676" [1] "Processing jog 45 at position 9901" [1] "Processing jog 46 at position 10126" [1] "Processing jog 47 at position 10351" [1] "Processing jog 48 at position 10576" [1] "Processing jog 49 at position 10801" [1] "Processing jog 50 at position 11026" [1] "Processing jog 51 at position 11251" [1] "Processing jog 52 at position 11476" [1] "Processing jog 53 at position 11701" [1] "Processing jog 54 at position 11926" [1] "Processing jog 55 at position 12151" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 x2 x1 -0.519 -420.179 4920.790 1.025 474.299 -475.334 1.020 474.207 -475.340 [1] "Screened jogs for high CO2 standard deviation:" [,1] [,2] [,3] [1,] 163.745888 7 0.0565633235 [2,] 163.804977 7 0.0344578351 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 163.708573 2 6.02679490 [2,] 163.745888 7 4.86701303 [3,] 163.756654 9 14.67553896 [4,] 163.762013 10 6.97405507 [5,] 163.885893 9 5.97048506 [6,] 163.999015 6 4.58544434 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.519 -421.258 1463.360 1.031 474.175 -472.721 1.026 474.084 [9] -472.861 [1] "plotting CO2 timeseries" [1] "plotting O2 timeseries" [1] "plotting CO2 flushing effect" [1] "co2 flushing effect zero adjustment fit did not converge for pos 1" [1] "co2 slope effect zero adjustment fit did not converge for pos 1" [1] "co2 slope effect zero adjustment fit did not converge for pos 12" [1] "plotting O2 flushing effect" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting SP-WT slope correction" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html"