Read 108900 records [1] "Analyzing /scr/raf/stephens/CFDAT/170719c.mr" [1] "Reading in data" Read 27225 records [1] "Approximately 121 jogs" [1] "Fixing CO2 glitches" Read 27225 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder CC161540" [1] "Position 2 Cylinder ND20050" [1] "Position 3 Cylinder OK30768" [1] "Position 4 Cylinder OK30770" [1] "Position 5 Cylinder OK30767" [1] "Position 6 Cylinder ND19517" [1] "Position 7 Cylinder CC129295" [1] "Position 8 Cylinder ND19273" [1] "Position 9 Cylinder ND19529" [1] "Position 10 Cylinder OK30772" [1] "Position 11 Cylinder ND19681" [1] "Position 12 Cylinder ND20887" [1] "Position 13 Cylinder JA02385" Read 13 records LIST_KNOWN: ND20050 ND19517 ND19273 ND19529 ND19681 ND20887 LIST_UNKNOWN: CC161540 OK30768 OK30770 OK30767 CC129295 OK30772 Read 171 records Read 54 records Read 536 records Read 2 items [1] "Processing jog 1 at position 1" [1] "Processing jog 2 at position 226" [1] "Processing jog 3 at position 451" [1] "Processing jog 4 at position 676" [1] "Processing jog 5 at position 901" [1] "Processing jog 6 at position 1126" [1] "Processing jog 7 at position 1351" [1] "Processing jog 8 at position 1576" [1] "Processing jog 9 at position 1801" [1] "Processing jog 10 at position 2026" [1] "Processing jog 11 at position 2251" [1] "Processing jog 12 at position 2476" [1] "Processing jog 13 at position 2701" [1] "Processing jog 14 at position 2926" [1] "Processing jog 15 at position 3151" [1] "Processing jog 16 at position 3376" [1] "Processing jog 17 at position 3601" [1] "Processing jog 18 at position 3826" [1] "Processing jog 19 at position 4051" [1] "Processing jog 20 at position 4276" [1] "Processing jog 21 at position 4501" [1] "Processing jog 22 at position 4726" [1] "Processing jog 23 at position 4951" [1] "Processing jog 24 at position 5176" [1] "Processing jog 25 at position 5401" [1] "Processing jog 26 at position 5626" [1] "Processing jog 27 at position 5851" [1] "Processing jog 28 at position 6076" [1] "Processing jog 29 at position 6301" [1] "Processing jog 30 at position 6526" [1] "Processing jog 31 at position 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "Processing jog 40 at position 8776" [1] "Processing jog 41 at position 9001" [1] "Processing jog 42 at position 9226" [1] "Processing jog 43 at position 9451" [1] "Processing jog 44 at position 9676" [1] "Processing jog 45 at position 9901" [1] "Processing jog 46 at position 10126" [1] "Processing jog 47 at position 10351" [1] "Processing jog 48 at position 10576" [1] "Processing jog 49 at position 10801" [1] "Processing jog 50 at position 11026" [1] "Processing jog 51 at position 11251" [1] "Processing jog 52 at position 11476" [1] "Processing jog 53 at position 11701" [1] "Processing jog 54 at position 11926" [1] "Processing jog 55 at position 12151" [1] "Processing jog 56 at position 12376" [1] "Processing jog 57 at position 12601" [1] "Processing jog 58 at position 12826" [1] "Processing jog 59 at position 13051" [1] "Processing jog 60 at position 13276" [1] "Processing jog 61 at position 13501" [1] "Processing jog 62 at position 13726" [1] "Processing jog 63 at position 13951" [1] "Processing jog 64 at position 14176" [1] "Processing jog 65 at position 14401" [1] "Processing jog 66 at position 14626" [1] "Processing jog 67 at position 14851" [1] "Processing jog 68 at position 15076" [1] "Processing jog 69 at position 15301" [1] "Processing jog 70 at position 15526" [1] "Processing jog 71 at position 15751" [1] "Processing jog 72 at position 15976" [1] "Processing jog 73 at position 16201" [1] "Processing jog 74 at position 16426" [1] "Processing jog 75 at position 16651" [1] "Processing jog 76 at position 16876" [1] "Processing jog 77 at position 17101" [1] "Processing jog 78 at position 17326" [1] "Processing jog 79 at position 17551" [1] "Processing jog 80 at position 17776" [1] "Processing jog 81 at position 18001" [1] "Processing jog 82 at position 18226" [1] "Processing jog 83 at position 18451" [1] "Processing jog 84 at position 18676" [1] "Processing jog 85 at position 18901" [1] "Processing jog 86 at position 19126" [1] "Processing jog 87 at position 19351" [1] "Processing jog 88 at position 19576" [1] "Processing jog 89 at position 19801" [1] "Processing jog 90 at position 20026" [1] "Processing jog 91 at position 20251" [1] "Processing jog 92 at position 20476" [1] "Processing jog 93 at position 20701" [1] "Processing jog 94 at position 20926" [1] "Processing jog 95 at position 21151" [1] "Processing jog 96 at position 21376" [1] "Processing jog 97 at position 21601" [1] "Processing jog 98 at position 21826" [1] "Processing jog 99 at position 22051" [1] "Processing jog 100 at position 22276" [1] "Processing jog 101 at position 22501" [1] "Processing jog 102 at position 22726" [1] "Processing jog 103 at position 22951" [1] "Processing jog 104 at position 23176" [1] "Processing jog 105 at position 23401" [1] "Processing jog 106 at position 23626" [1] "Processing jog 107 at position 23851" [1] "Processing jog 108 at position 24076" [1] "Processing jog 109 at position 24301" [1] "Processing jog 110 at position 24526" [1] "Processing jog 111 at position 24751" [1] "Processing jog 112 at position 24976" [1] "Processing jog 113 at position 25201" [1] "Processing jog 114 at position 25426" [1] "Processing jog 115 at position 25651" [1] "Processing jog 116 at position 25876" [1] "Processing jog 117 at position 26101" [1] "Processing jog 118 at position 26326" [1] "Processing jog 119 at position 26551" [1] "Processing jog 120 at position 26776" [1] "Processing jog 121 at position 27001" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 x2 x1 -0.586 -774.205 -2256.485 0.900 394.376 -394.066 0.900 394.476 -394.090 [1] "Screened jogs for high CO2 standard deviation:" [,1] [,2] [,3] [1,] 200.693195 2 0.0323429514 [2,] 200.714717 4 0.0421558938 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 200.693195 2 88.21190010 [2,] 200.698542 1 4.61132989 [3,] 200.703850 2 5.05879948 [4,] 200.709284 3 8.52888761 [5,] 200.714717 4 29.96176187 [6,] 200.720074 5 6.42746716 [7,] 200.725476 6 4.68722860 [8,] 200.730907 7 4.72402148 [9,] 200.736341 8 4.41585837 [10,] 200.741643 9 5.34581715 [11,] 200.746902 10 5.26281679 [12,] 200.752193 11 4.89442804 [13,] 200.762998 12 5.00709597 [14,] 200.768433 11 4.71533325 [15,] 200.773865 10 5.21517673 [16,] 200.779295 9 4.10273813 [17,] 200.784807 8 5.81466371 [18,] 200.790237 7 4.40286935 [19,] 200.795669 6 5.14006061 [20,] 200.801097 5 5.12502140 [21,] 200.806527 4 6.20898311 [22,] 200.811961 3 5.50213899 [23,] 200.817394 2 5.12614807 [24,] 200.828226 1 5.45623596 [25,] 200.833660 2 5.21543508 [26,] 200.839092 3 5.18768702 [27,] 200.844525 4 4.82645887 [28,] 200.849960 5 5.34610885 [29,] 200.855392 6 4.56369417 [30,] 200.860823 7 5.90332389 [31,] 200.866274 8 5.44691166 [32,] 200.871706 9 6.42318635 [33,] 200.877136 10 5.28415630 [34,] 200.882571 11 7.36738232 [35,] 200.893385 12 7.81150421 [36,] 200.898820 11 6.02371214 [37,] 200.904255 10 6.47693839 [38,] 200.909703 9 4.06833102 [39,] 200.915133 8 5.70063019 [40,] 200.925999 6 4.29778857 [41,] 200.936864 4 4.27440430 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.591 -768.599 40.932 0.900 394.377 -392.660 0.900 394.477 [9] -392.747 [1] "plotting CO2 timeseries" [1] "plotting O2 timeseries" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting SP-WT slope correction" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html"