Read 80100 records [1] "Analyzing /scr/raf/stephens/CFDAT/160913z.mr" [1] "Reading in data" Read 20025 records [1] "Approximately 89 jogs" [1] "Fixing CO2 glitches" Read 20025 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder CB10144" [1] "Position 2 Cylinder CB10141" [1] "Position 3 Cylinder OK30762" [1] "Position 4 Cylinder CC129295" [1] "Position 5 Cylinder NA" [1] "Position 6 Cylinder CB10128" [1] "Position 7 Cylinder CC161540" [1] "Position 8 Cylinder CB10260" [1] "Position 9 Cylinder OK30761" [1] "Position 10 Cylinder OK30772" [1] "Position 11 Cylinder OK30769" [1] "Position 12 Cylinder CC339490" [1] "Position 13 Cylinder NA" Read 13 records LIST_KNOWN: CB10144 CB10141 CC129295 CB10128 CC161540 CB10260 LIST_UNKNOWN: OK30762 OK30761 OK30772 OK30769 Read 171 records Read 54 records Read 536 records Read 2 items [1] "Processing jog 1 at position 1" [1] "Processing jog 2 at position 226" [1] "Processing jog 3 at position 451" [1] "Processing jog 4 at position 676" [1] "Processing jog 5 at position 901" [1] "Processing jog 6 at position 1126" [1] "Processing jog 7 at position 1351" [1] "Processing jog 8 at position 1576" [1] "Processing jog 9 at position 1801" [1] "Processing jog 10 at position 2026" [1] "Processing jog 11 at position 2251" [1] "Processing jog 12 at position 2476" [1] "Processing jog 13 at position 2701" [1] "Processing jog 14 at position 2926" [1] "Processing jog 15 at position 3151" [1] "Processing jog 16 at position 3376" [1] "Processing jog 17 at position 3601" [1] "Processing jog 18 at position 3826" [1] "Processing jog 19 at position 4051" [1] "Processing jog 20 at position 4276" [1] "Processing jog 21 at position 4501" [1] "Processing jog 22 at position 4726" [1] "Processing jog 23 at position 4951" [1] "Processing jog 24 at position 5176" [1] "Processing jog 25 at position 5401" [1] "Processing jog 26 at position 5626" [1] "Processing jog 27 at position 5851" [1] "Processing jog 28 at position 6076" [1] "Processing jog 29 at position 6301" [1] "Processing jog 30 at position 6526" [1] "Processing jog 31 at position 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "Processing jog 40 at position 8776" [1] "Processing jog 41 at position 9001" [1] "Processing jog 42 at position 9226" [1] "Processing jog 43 at position 9451" [1] "Processing jog 44 at position 9676" [1] "Processing jog 45 at position 9901" [1] "Processing jog 46 at position 10126" [1] "Processing jog 47 at position 10351" [1] "Processing jog 48 at position 10576" [1] "Processing jog 49 at position 10801" [1] "Processing jog 50 at position 11026" [1] "Processing jog 51 at position 11251" [1] "Processing jog 52 at position 11476" [1] "Processing jog 53 at position 11701" [1] "Processing jog 54 at position 11926" [1] "Processing jog 55 at position 12151" [1] "Processing jog 56 at position 12376" [1] "Processing jog 57 at position 12601" [1] "Processing jog 58 at position 12826" [1] "Processing jog 59 at position 13051" [1] "Processing jog 60 at position 13276" [1] "Processing jog 61 at position 13501" [1] "Processing jog 62 at position 13726" [1] "Processing jog 63 at position 13951" [1] "Processing jog 64 at position 14176" [1] "Processing jog 65 at position 14401" [1] "Processing jog 66 at position 14626" [1] "Processing jog 67 at position 14851" [1] "Processing jog 68 at position 15076" [1] "Processing jog 69 at position 15301" [1] "Processing jog 70 at position 15526" [1] "Processing jog 71 at position 15751" [1] "Processing jog 72 at position 15976" [1] "Processing jog 73 at position 16201" [1] "Processing jog 74 at position 16426" [1] "Processing jog 75 at position 16651" [1] "Processing jog 76 at position 16876" [1] "Processing jog 77 at position 17101" [1] "Processing jog 78 at position 17326" [1] "Processing jog 79 at position 17551" [1] "Processing jog 80 at position 17776" [1] "Processing jog 81 at position 18001" [1] "Processing jog 82 at position 18226" [1] "Processing jog 83 at position 18451" [1] "Processing jog 84 at position 18676" [1] "Processing jog 85 at position 18901" [1] "Processing jog 86 at position 19126" [1] "Processing jog 87 at position 19351" [1] "Processing jog 88 at position 19576" [1] "Processing jog 89 at position 19801" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 x2 x1 -0.158 1626.801 87909.237 0.318 492.480 -508.557 0.314 492.263 -508.611 [1] "Screened jogs for high CO2 standard deviation:" [,1] [,2] [,3] [1,] 257.744809 10 0.0212488392 [2,] 257.750170 9 0.0229018547 [3,] 257.755503 8 0.0210877567 [4,] 257.760835 7 0.0243234223 [5,] 257.776830 3 0.0200822970 [6,] 257.782162 2 0.0210560494 [7,] NA NA NA [8,] 257.814048 6 0.0245105245 [9,] 257.830007 9 0.0221806230 [10,] 257.851229 12 0.0239829904 [11,] 257.856550 11 0.0221437172 [12,] 257.861879 10 0.0241264592 [13,] 257.899099 2 0.0212302850 [14,] 257.904405 1 0.0212775370 [15,] 257.909706 1 0.0263812894 [16,] 257.920422 3 0.0204629867 [17,] 257.936531 7 0.0211698858 [18,] 257.958179 11 0.0208222841 [19,] 257.974366 11 0.0223973763 [20,] 257.990551 8 0.0216866005 [21,] 257.995930 7 0.0239344286 [22,] 258.022523 1 0.0223097678 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 257.598784 10 4.88690971 [2,] 257.609402 12 23.06527760 [3,] 257.614697 12 24.48402384 [4,] 257.630943 9 7.06582511 [5,] 257.636362 8 9.95377441 [6,] 257.641731 7 12.40805758 [7,] 257.696327 6 4.40871206 [8,] 257.701702 7 4.54107851 [9,] 257.707060 8 4.50351376 [10,] 257.712466 9 4.62790352 [11,] 257.717833 10 4.63042924 [12,] 257.723239 11 5.30534418 [13,] 257.728601 12 27.86719174 [14,] 257.733962 12 30.33629697 [15,] 257.739377 11 10.19728589 [16,] 257.744809 10 18.00615643 [17,] 257.750170 9 22.62711011 [18,] 257.755503 8 24.11387486 [19,] 257.760835 7 22.47371369 [20,] 257.766166 6 10.35195221 [21,] 257.771498 4 33.34078508 [22,] 257.776830 3 15.65696673 [23,] 257.782162 2 19.82953638 [24,] 257.787488 1 18.04335742 [25,] 257.792736 1 17.81219555 [26,] 257.798059 2 16.21679649 [27,] 257.803382 3 73.88392472 [28,] 257.808715 4 14.12502273 [29,] 257.814048 6 17.28864859 [30,] 257.819360 7 18.53143305 [31,] 257.824675 8 20.43636963 [32,] 257.830007 9 21.42723954 [33,] 257.835330 10 22.29722273 [34,] 257.840645 11 24.26016383 [35,] 257.845936 12 63.79645926 [36,] 257.851229 12 64.31046755 [37,] 257.856550 11 39.88489269 [38,] 257.861879 10 41.38997795 [39,] 257.867202 9 47.79734611 [40,] 257.872540 8 47.96286787 [41,] 257.877842 7 51.28924760 [42,] 257.883139 6 51.96440396 [43,] 257.888471 4 54.81568395 [44,] 257.893804 3 59.02266640 [45,] 257.899099 2 67.08507595 [46,] 257.904405 1 66.36021067 [47,] 257.909706 1 69.60750003 [48,] 257.915016 2 75.03125181 [49,] 257.920422 3 73.20762718 [50,] 257.925770 4 72.98089311 [51,] 257.931174 6 76.93058330 [52,] 257.936531 7 81.07812673 [53,] 257.941934 8 83.55064231 [54,] 257.947344 9 85.98043003 [55,] 257.952762 10 86.77744734 [56,] 257.958179 11 89.84263009 [57,] 257.963566 12 114.09080577 [58,] 257.968947 12 116.82281956 [59,] 257.974366 11 101.92230384 [60,] 257.979737 10 101.15584084 [61,] 257.985142 9 106.48274396 [62,] 257.990551 8 107.11497722 [63,] 257.995930 7 110.00721841 [64,] 258.001255 6 108.28842192 [65,] 258.006563 4 110.59493963 [66,] 258.011888 3 114.39948028 [67,] 258.017213 2 123.36575107 [68,] 258.022523 1 120.92424980 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.401 -794.743 21029.209 -1.159 356.091 -562.543 -1.156 [8] 356.324 -562.507 [1] "plotting CO2 timeseries" [1] "plotting O2 timeseries" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "o2 stagnant effect zero adjustment fit did not converge for pos 9" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting SP-WT slope correction" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html"