Read 80100 records [1] "Analyzing /scr/raf/stephens/CFDAT/160913z.mr" [1] "Reading in data" Read 20025 records [1] "Approximately 89 jogs" [1] "Fixing CO2 glitches" Read 20025 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder CB10144" [1] "Position 2 Cylinder CB10141" [1] "Position 3 Cylinder OK30762" [1] "Position 4 Cylinder CC129295" [1] "Position 5 Cylinder NA" [1] "Position 6 Cylinder CB10128" [1] "Position 7 Cylinder CC161540" [1] "Position 8 Cylinder CB10260" [1] "Position 9 Cylinder OK30761" [1] "Position 10 Cylinder OK30772" [1] "Position 11 Cylinder OK30769" [1] "Position 12 Cylinder CC339490" [1] "Position 13 Cylinder NA" Read 13 records LIST_KNOWN: CB10144 CB10141 CC129295 CB10128 CC161540 CB10260 LIST_UNKNOWN: OK30762 OK30761 OK30772 OK30769 Read 173 records Read 54 records Read 536 records Read 2 items [1] "Processing jog 1 at position 1" [1] "Processing jog 2 at position 226" [1] "Processing jog 3 at position 451" [1] "Processing jog 4 at position 676" [1] "Processing jog 5 at position 901" [1] "Processing jog 6 at position 1126" [1] "Processing jog 7 at position 1351" [1] "Processing jog 8 at position 1576" [1] "Processing jog 9 at position 1801" [1] "Processing jog 10 at position 2026" [1] "Processing jog 11 at position 2251" [1] "Processing jog 12 at position 2476" [1] "Processing jog 13 at position 2701" [1] "Processing jog 14 at position 2926" [1] "Processing jog 15 at position 3151" [1] "Processing jog 16 at position 3376" [1] "Processing jog 17 at position 3601" [1] "Processing jog 18 at position 3826" [1] "Processing jog 19 at position 4051" [1] "Processing jog 20 at position 4276" [1] "Processing jog 21 at position 4501" [1] "Processing jog 22 at position 4726" [1] "Processing jog 23 at position 4951" [1] "Processing jog 24 at position 5176" [1] "Processing jog 25 at position 5401" [1] "Processing jog 26 at position 5626" [1] "Processing jog 27 at position 5851" [1] "Processing jog 28 at position 6076" [1] "Processing jog 29 at position 6301" [1] "Processing jog 30 at position 6526" [1] "Processing jog 31 at position 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "Processing jog 40 at position 8776" [1] "Processing jog 41 at position 9001" [1] "Processing jog 42 at position 9226" [1] "Processing jog 43 at position 9451" [1] "Processing jog 44 at position 9676" [1] "Processing jog 45 at position 9901" [1] "Processing jog 46 at position 10126" [1] "Processing jog 47 at position 10351" [1] "Processing jog 48 at position 10576" [1] "Processing jog 49 at position 10801" [1] "Processing jog 50 at position 11026" [1] "Processing jog 51 at position 11251" [1] "Processing jog 52 at position 11476" [1] "Processing jog 53 at position 11701" [1] "Processing jog 54 at position 11926" [1] "Processing jog 55 at position 12151" [1] "Processing jog 56 at position 12376" [1] "Processing jog 57 at position 12601" [1] "Processing jog 58 at position 12826" [1] "Processing jog 59 at position 13051" [1] "Processing jog 60 at position 13276" [1] "Processing jog 61 at position 13501" [1] "Processing jog 62 at position 13726" [1] "Processing jog 63 at position 13951" [1] "Processing jog 64 at position 14176" [1] "Processing jog 65 at position 14401" [1] "Processing jog 66 at position 14626" [1] "Processing jog 67 at position 14851" [1] "Processing jog 68 at position 15076" [1] "Processing jog 69 at position 15301" [1] "Processing jog 70 at position 15526" [1] "Processing jog 71 at position 15751" [1] "Processing jog 72 at position 15976" [1] "Processing jog 73 at position 16201" [1] "Processing jog 74 at position 16426" [1] "Processing jog 75 at position 16651" [1] "Processing jog 76 at position 16876" [1] "Processing jog 77 at position 17101" [1] "Processing jog 78 at position 17326" [1] "Processing jog 79 at position 17551" [1] "Processing jog 80 at position 17776" [1] "Processing jog 81 at position 18001" [1] "Processing jog 82 at position 18226" [1] "Processing jog 83 at position 18451" [1] "Processing jog 84 at position 18676" [1] "Processing jog 85 at position 18901" [1] "Processing jog 86 at position 19126" [1] "Processing jog 87 at position 19351" [1] "Processing jog 88 at position 19576" [1] "Processing jog 89 at position 19801" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 x2 x1 -0.159 1636.365 87914.130 0.318 494.672 -509.085 0.314 492.264 -508.611 [1] "Screened jogs for high CO2 standard deviation:" [,1] [,2] [,3] [1,] 257.744809 10 0.0212444784 [2,] 257.750170 9 0.0228971546 [3,] 257.755503 8 0.0210834289 [4,] 257.760835 7 0.0243184304 [5,] 257.776830 3 0.0200781756 [6,] 257.782162 2 0.0210517281 [7,] NA NA NA [8,] 257.814048 6 0.0245054943 [9,] 257.830007 9 0.0221760709 [10,] 257.851229 12 0.0239780684 [11,] 257.856550 11 0.0221391728 [12,] 257.861879 10 0.0241215078 [13,] 257.899099 2 0.0212259280 [14,] 257.904405 1 0.0212731703 [15,] 257.909706 1 0.0263758753 [16,] 257.920422 3 0.0204587872 [17,] 257.936531 7 0.0211655412 [18,] 257.958179 11 0.0208180108 [19,] 257.974366 11 0.0223927798 [20,] 257.990551 8 0.0216821499 [21,] 257.995930 7 0.0239295166 [22,] 258.022523 1 0.0223051892 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 257.598784 10 4.91781103 [2,] 257.609402 12 23.21112590 [3,] 257.614697 12 24.63884327 [4,] 257.630943 9 7.11050433 [5,] 257.636362 8 10.01671495 [6,] 257.641731 7 12.48651725 [7,] 257.696327 6 4.43658959 [8,] 257.701702 7 4.56979304 [9,] 257.707060 8 4.53199075 [10,] 257.712466 9 4.65716707 [11,] 257.717833 10 4.65970876 [12,] 257.723239 11 5.33889138 [13,] 257.728601 12 28.04340390 [14,] 257.733962 12 30.52812199 [15,] 257.739377 11 10.26176623 [16,] 257.744809 10 18.12001447 [17,] 257.750170 9 22.77018775 [18,] 257.755503 8 24.26635373 [19,] 257.760835 7 22.61582136 [20,] 257.766166 6 10.41741054 [21,] 257.771498 4 33.55160833 [22,] 257.776830 3 15.75597018 [23,] 257.782162 2 19.95492416 [24,] 257.787488 1 18.15745069 [25,] 257.792736 1 17.92482712 [26,] 257.798059 2 16.31933990 [27,] 257.803382 3 74.35111375 [28,] 257.808715 4 14.21433926 [29,] 257.814048 6 17.39796962 [30,] 257.819360 7 18.64861257 [31,] 257.824675 8 20.56559460 [32,] 257.830007 9 21.56273006 [33,] 257.835330 10 22.43821440 [34,] 257.840645 11 24.41356773 [35,] 257.845936 12 64.19986238 [36,] 257.851229 12 64.71712089 [37,] 257.856550 11 40.13709619 [38,] 257.861879 10 41.65169853 [39,] 257.867202 9 48.09958230 [40,] 257.872540 8 48.26615070 [41,] 257.877842 7 51.61356408 [42,] 257.883139 6 52.29298964 [43,] 257.888471 4 55.16229908 [44,] 257.893804 3 59.39588347 [45,] 257.899099 2 67.50927393 [46,] 257.904405 1 66.77982512 [47,] 257.909706 1 70.04764802 [48,] 257.915016 2 75.50569572 [49,] 257.920422 3 73.67053979 [50,] 257.925770 4 73.44237202 [51,] 257.931174 6 77.41703721 [52,] 257.936531 7 81.59080674 [53,] 257.941934 8 84.07895674 [54,] 257.947344 9 86.52410870 [55,] 257.952762 10 87.32616578 [56,] 257.958179 11 90.41073055 [57,] 257.963566 12 114.81223432 [58,] 257.968947 12 117.56152341 [59,] 257.974366 11 102.56678750 [60,] 257.979737 10 101.79547794 [61,] 257.985142 9 107.15606458 [62,] 257.990551 8 107.79229563 [63,] 257.995930 7 110.70282528 [64,] 258.001255 6 108.97316036 [65,] 258.006563 4 111.29426283 [66,] 258.011888 3 115.12286067 [67,] 258.017213 2 124.14582774 [68,] 258.022523 1 121.68888816 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.404 -800.490 21071.546 -1.195 354.749 -564.649 -1.156 [8] 356.324 -562.507 [1] "plotting CO2 timeseries" [1] "plotting O2 timeseries" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "o2 stagnant effect zero adjustment fit did not converge for pos 9" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting SP-WT slope correction" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html"