Read 87300 records [1] "Analyzing /scr/raf/stephens/CFDAT/150907a.mr" [1] "Reading in data" Read 21825 records [1] "Approximately 97 jogs" [1] "Fixing CO2 glitches" Read 21825 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder CB10144" [1] "Position 2 Cylinder OK30761" [1] "Position 3 Cylinder CB10128" [1] "Position 4 Cylinder OK30772" [1] "Position 5 Cylinder CB11235" [1] "Position 6 Cylinder OK30764" [1] "Position 7 Cylinder CB10141" [1] "Position 8 Cylinder OK30771" [1] "Position 9 Cylinder CB11227" [1] "Position 10 Cylinder CB10260" [1] "Position 11 Cylinder OK30768" [1] "Position 12 Cylinder CB11217" [1] "Position 13 Cylinder NA" Read 13 records LIST_KNOWN: CB10144 CB10128 CB10141 CB10260 LIST_UNKNOWN: OK30761 OK30772 CB11235 OK30764 OK30771 CB11227 OK30768 CB11217 Read 171 records Read 54 records Read 536 records Read 2 items [1] "Processing jog 1 at position 1" [1] "Processing jog 2 at position 226" [1] "Processing jog 3 at position 451" [1] "Processing jog 4 at position 676" [1] "Processing jog 5 at position 901" [1] "Processing jog 6 at position 1126" [1] "Processing jog 7 at position 1351" [1] "Processing jog 8 at position 1576" [1] "Processing jog 9 at position 1801" [1] "Processing jog 10 at position 2026" [1] "Processing jog 11 at position 2251" [1] "Processing jog 12 at position 2476" [1] "Processing jog 13 at position 2701" [1] "Processing jog 14 at position 2926" [1] "Processing jog 15 at position 3151" [1] "Processing jog 16 at position 3376" [1] "Processing jog 17 at position 3601" [1] "Processing jog 18 at position 3826" [1] "Processing jog 19 at position 4051" [1] "Processing jog 20 at position 4276" [1] "Processing jog 21 at position 4501" [1] "Processing jog 22 at position 4726" [1] "Processing jog 23 at position 4951" [1] "Processing jog 24 at position 5176" [1] "Processing jog 25 at position 5401" [1] "Processing jog 26 at position 5626" [1] "Processing jog 27 at position 5851" [1] "Processing jog 28 at position 6076" [1] "Processing jog 29 at position 6301" [1] "Processing jog 30 at position 6526" [1] "Processing jog 31 at position 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "Processing jog 40 at position 8776" [1] "Processing jog 41 at position 9001" [1] "Processing jog 42 at position 9226" [1] "Processing jog 43 at position 9451" [1] "Processing jog 44 at position 9676" [1] "Processing jog 45 at position 9901" [1] "Processing jog 46 at position 10126" [1] "Processing jog 47 at position 10351" [1] "Processing jog 48 at position 10576" [1] "Processing jog 49 at position 10801" [1] "Processing jog 50 at position 11026" [1] "Processing jog 51 at position 11251" [1] "Processing jog 52 at position 11476" [1] "Processing jog 53 at position 11701" [1] "Processing jog 54 at position 11926" [1] "Processing jog 55 at position 12151" [1] "Processing jog 56 at position 12376" [1] "Processing jog 57 at position 12601" [1] "Processing jog 58 at position 12826" [1] "Processing jog 59 at position 13051" [1] "Processing jog 60 at position 13276" [1] "Processing jog 61 at position 13501" [1] "Processing jog 62 at position 13726" [1] "Processing jog 63 at position 13951" [1] "Processing jog 64 at position 14176" [1] "Processing jog 65 at position 14401" [1] "Processing jog 66 at position 14626" [1] "Processing jog 67 at position 14851" [1] "Processing jog 68 at position 15076" [1] "Processing jog 69 at position 15301" [1] "Processing jog 70 at position 15526" [1] "Processing jog 71 at position 15751" [1] "Processing jog 72 at position 15976" [1] "Processing jog 73 at position 16201" [1] "Processing jog 74 at position 16426" [1] "Processing jog 75 at position 16651" [1] "Processing jog 76 at position 16876" [1] "Processing jog 77 at position 17101" [1] "Processing jog 78 at position 17326" [1] "Processing jog 79 at position 17551" [1] "Processing jog 80 at position 17776" [1] "Processing jog 81 at position 18001" [1] "Processing jog 82 at position 18226" [1] "Processing jog 83 at position 18451" [1] "Processing jog 84 at position 18676" [1] "Processing jog 85 at position 18901" [1] "Processing jog 86 at position 19126" [1] "Processing jog 87 at position 19351" [1] "Processing jog 88 at position 19576" [1] "Processing jog 89 at position 19801" [1] "Processing jog 90 at position 20026" [1] "Processing jog 91 at position 20251" [1] "Processing jog 92 at position 20476" [1] "Processing jog 93 at position 20701" [1] "Processing jog 94 at position 20926" [1] "Processing jog 95 at position 21151" [1] "Processing jog 96 at position 21376" [1] "Processing jog 97 at position 21601" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 x2 x1 -0.671 -1112.599 -2618.770 0.907 412.540 -413.214 0.906 412.621 -413.257 [1] "Screened jogs for high CO2 standard deviation:" [,1] [,2] [,3] [1,] 250.779396 2 0.0355073438 [2,] 250.800419 4 0.0362938886 [3,] 250.805752 5 0.0534245530 [4,] 250.811081 6 0.0261932806 [5,] 250.827099 9 0.0414802855 [6,] 250.837761 11 0.0504523696 [7,] 250.843092 12 0.0211081170 [8,] 250.864372 9 0.0212968010 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 250.779396 2 75.72188825 [2,] 250.789913 2 7.83458708 [3,] 250.800419 4 33.98789998 [4,] 250.837761 11 22.40383837 [5,] 250.933678 5 10.81746086 [6,] 250.939009 6 8.01872561 [7,] 250.944341 7 19.65133379 [8,] 250.955018 9 8.11276398 [9,] 250.981640 11 23.32237217 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.670 -1112.268 183.775 0.907 412.539 -412.383 0.906 [8] 412.620 -412.462 [1] "plotting CO2 timeseries" [1] "plotting O2 timeseries" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting SP-WT slope correction" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html"