Read 38700 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/150831z.mr"
[1] "Reading in data"
Read 9675 records
[1] "Approximately  43  jogs"
[1] "Fixing CO2 glitches"
Read 9675 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  CB10144"
[1] "Position  2    Cylinder  NA"
[1] "Position  3    Cylinder  CB10128"
[1] "Position  4    Cylinder  CB11235"
[1] "Position  5    Cylinder  NA"
[1] "Position  6    Cylinder  CB11217"
[1] "Position  7    Cylinder  CB10141"
[1] "Position  8    Cylinder  NA"
[1] "Position  9    Cylinder  CB11227"
[1] "Position  10    Cylinder  CB10260"
[1] "Position  11    Cylinder  NA"
[1] "Position  12    Cylinder  NA"
[1] "Position  13    Cylinder  NA"
Read 13 records
LIST_KNOWN: CB10144 CB10128 CB10141 CB10260 
LIST_UNKNOWN: CB11235 CB11217 CB11227 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "Processing jog 3 at position 451"
[1] "Processing jog 4 at position 676"
[1] "Processing jog 5 at position 901"
[1] "Processing jog 6 at position 1126"
[1] "Processing jog 7 at position 1351"
[1] "Processing jog 8 at position 1576"
[1] "Processing jog 9 at position 1801"
[1] "Processing jog 10 at position 2026"
[1] "Processing jog 11 at position 2251"
[1] "Processing jog 12 at position 2476"
[1] "Processing jog 13 at position 2701"
[1] "Processing jog 14 at position 2926"
[1] "Processing jog 15 at position 3151"
[1] "Processing jog 16 at position 3376"
[1] "Processing jog 17 at position 3601"
[1] "Processing jog 18 at position 3826"
[1] "Processing jog 19 at position 4051"
[1] "Processing jog 20 at position 4276"
[1] "Processing jog 21 at position 4501"
[1] "Processing jog 22 at position 4726"
[1] "Processing jog 23 at position 4951"
[1] "Processing jog 24 at position 5176"
[1] "Processing jog 25 at position 5401"
[1] "Processing jog 26 at position 5626"
[1] "Processing jog 27 at position 5851"
[1] "Processing jog 28 at position 6076"
[1] "Processing jog 29 at position 6301"
[1] "Processing jog 30 at position 6526"
[1] "Processing jog 31 at position 6751"
[1] "Processing jog 32 at position 6976"
[1] "Processing jog 33 at position 7201"
[1] "Processing jog 34 at position 7426"
[1] "Processing jog 35 at position 7651"
[1] "Processing jog 36 at position 7876"
[1] "Processing jog 37 at position 8101"
[1] "Processing jog 38 at position 8326"
[1] "Processing jog 39 at position 8551"
[1] "Processing jog 40 at position 8776"
[1] "Processing jog 41 at position 9001"
[1] "Processing jog 42 at position 9226"
[1] "Processing jog 43 at position 9451"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -0.631 -1124.189 -2943.387     0.905   412.506  -413.196     0.904   412.586 
          
 -413.238 
[1] "Screened jogs for high CO2 standard deviation:"
           [,1] [,2]         [,3]
[1,] 243.733386    3 0.0445613869
[2,] 243.765058    9 0.0452907106
[3,] 243.780892    9 0.0208104950
[4,] 243.839121    9 0.0499688025
[5,] 243.913456    9 0.0257708793
[1] "Screened jogs for high O2 standard deviation:"
        [,1] [,2]       [,3]
X 243.733386    3 61.4059272
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]    -0.622 -1121.928   133.320     0.905   412.504  -412.343     0.904
[8]   412.585  -412.422
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "co2 stagnant effect zero adjustment fit did not converge for pos 7"
[1] "plotting O2 flushing effect"
[1] "o2 stagnant effect zero adjustment fit did not converge for pos 7"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting o2 rollover"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"