Read 33300 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/150827a.mr"
[1] "Reading in data"
Read 8325 records
[1] "Approximately  37  jogs"
[1] "Fixing CO2 glitches"
Read 8325 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  CB10144"
[1] "Position  2    Cylinder  NA"
[1] "Position  3    Cylinder  CB10128"
[1] "Position  4    Cylinder  NA"
[1] "Position  5    Cylinder  NA"
[1] "Position  6    Cylinder  CB11227"
[1] "Position  7    Cylinder  CB10141"
[1] "Position  8    Cylinder  NA"
[1] "Position  9    Cylinder  CB11235"
[1] "Position  10    Cylinder  CB10260"
[1] "Position  11    Cylinder  NA"
[1] "Position  12    Cylinder  NA"
[1] "Position  13    Cylinder  NA"
Read 13 records
LIST_KNOWN: CB10144 CB10128 CB10141 CB10260 
LIST_UNKNOWN: CB11227 CB11235 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "Processing jog 3 at position 451"
[1] "Processing jog 4 at position 676"
[1] "Processing jog 5 at position 901"
[1] "Processing jog 6 at position 1126"
[1] "Processing jog 7 at position 1351"
[1] "Processing jog 8 at position 1576"
[1] "Processing jog 9 at position 1801"
[1] "Processing jog 10 at position 2026"
[1] "Processing jog 11 at position 2251"
[1] "Processing jog 12 at position 2476"
[1] "Processing jog 13 at position 2701"
[1] "Processing jog 14 at position 2926"
[1] "Processing jog 15 at position 3151"
[1] "Processing jog 16 at position 3376"
[1] "Processing jog 17 at position 3601"
[1] "Processing jog 18 at position 3826"
[1] "Processing jog 19 at position 4051"
[1] "Processing jog 20 at position 4276"
[1] "Processing jog 21 at position 4501"
[1] "Processing jog 22 at position 4726"
[1] "Processing jog 23 at position 4951"
[1] "Processing jog 24 at position 5176"
[1] "Processing jog 25 at position 5401"
[1] "Processing jog 26 at position 5626"
[1] "Processing jog 27 at position 5851"
[1] "Processing jog 28 at position 6076"
[1] "Processing jog 29 at position 6301"
[1] "Processing jog 30 at position 6526"
[1] "Processing jog 31 at position 6751"
[1] "Processing jog 32 at position 6976"
[1] "Processing jog 33 at position 7201"
[1] "Processing jog 34 at position 7426"
[1] "Processing jog 35 at position 7651"
[1] "Processing jog 36 at position 7876"
[1] "Processing jog 37 at position 8101"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -0.620 -1128.546 -3046.009     0.908   412.585  -413.263     0.907   412.666 
          
 -413.305 
[1] "Screened jogs for high CO2 standard deviation:"
           [,1] [,2]         [,3]
[1,] 239.773851    7 0.0203832334
[2,] 239.817087    1 0.0205354955
[1] "Screened jogs for high O2 standard deviation:"
            [,1] [,2]        [,3]
 [1,] 239.752864    3 31.16567334
 [2,] 239.768607    6 22.69671551
 [3,] 239.773851    7 69.63311946
 [4,] 239.779239    9 27.04200808
 [5,] 239.784672   10 54.69868430
 [6,] 239.790047   10 16.11197513
 [7,] 239.811672    3  4.46995963
 [8,] 239.822469    1 26.65074171
 [9,] 239.909109    9 11.11703419
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]    -0.620 -1127.343   112.329     0.908   412.583  -412.433     0.907
[8]   412.664  -412.512
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "plotting O2 flushing effect"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting o2 rollover"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"