Read 52200 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/140703a.mr"
[1] "Reading in data"
Read 13050 records
[1] "Approximately  58  jogs"
[1] "Fixing CO2 glitches"
Read 13050 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  CB10260"
[1] "Position  2    Cylinder  CC129271"
[1] "Position  3    Cylinder  CC161540"
[1] "Position  4    Cylinder  CB10128"
[1] "Position  5    Cylinder  CC129295"
[1] "Position  6    Cylinder  CB10141"
[1] "Position  7    Cylinder  CC129281"
[1] "Position  8    Cylinder  CC129293"
[1] "Position  9    Cylinder  CB10144"
[1] "Position  10    Cylinder  CB08910"
[1] "Position  11    Cylinder  CB08911"
[1] "Position  12    Cylinder  CC129307"
[1] "Position  13    Cylinder  OK30069"
Read 13 records
LIST_KNOWN: CC129271 CC161540 CC129295 CC129281 
LIST_UNKNOWN: OK30069 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "Processing jog 3 at position 451"
[1] "Processing jog 4 at position 676"
[1] "Processing jog 5 at position 901"
[1] "Processing jog 6 at position 1126"
[1] "Processing jog 7 at position 1351"
[1] "Processing jog 8 at position 1576"
[1] "Processing jog 9 at position 1801"
[1] "Processing jog 10 at position 2026"
[1] "Processing jog 11 at position 2251"
[1] "Processing jog 12 at position 2476"
[1] "Processing jog 13 at position 2701"
[1] "Processing jog 14 at position 2926"
[1] "Processing jog 15 at position 3151"
[1] "Processing jog 16 at position 3376"
[1] "Processing jog 17 at position 3601"
[1] "Processing jog 18 at position 3826"
[1] "Processing jog 19 at position 4051"
[1] "Processing jog 20 at position 4276"
[1] "Processing jog 21 at position 4501"
[1] "Processing jog 22 at position 4726"
[1] "Processing jog 23 at position 4951"
[1] "Processing jog 24 at position 5176"
[1] "Processing jog 25 at position 5401"
[1] "Processing jog 26 at position 5626"
[1] "Processing jog 27 at position 5851"
[1] "Processing jog 28 at position 6076"
[1] "Processing jog 29 at position 6301"
[1] "Processing jog 30 at position 6526"
[1] "Processing jog 31 at position 6751"
[1] "Processing jog 32 at position 6976"
[1] "Processing jog 33 at position 7201"
[1] "Processing jog 34 at position 7426"
[1] "Processing jog 35 at position 7651"
[1] "Processing jog 36 at position 7876"
[1] "Processing jog 37 at position 8101"
[1] "Processing jog 38 at position 8326"
[1] "Processing jog 39 at position 8551"
[1] "Processing jog 40 at position 8776"
[1] "Processing jog 41 at position 9001"
[1] "Processing jog 42 at position 9226"
[1] "Processing jog 43 at position 9451"
[1] "Processing jog 44 at position 9676"
[1] "Processing jog 45 at position 9901"
[1] "Processing jog 46 at position 10126"
[1] "Processing jog 47 at position 10351"
[1] "Processing jog 48 at position 10576"
[1] "Processing jog 49 at position 10801"
[1] "Processing jog 50 at position 11026"
[1] "Processing jog 51 at position 11251"
[1] "Processing jog 52 at position 11476"
[1] "Processing jog 53 at position 11701"
[1] "Processing jog 54 at position 11926"
[1] "Processing jog 55 at position 12151"
[1] "Processing jog 56 at position 12376"
[1] "Processing jog 57 at position 12601"
[1] "Processing jog 58 at position 12826"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -0.636 -1074.463 -6718.193     0.937   401.004  -402.848     0.935   401.087 
          
 -402.955 
[1] "Screened jogs for high CO2 standard deviation:"
         [,1] [,2]         [,3]
x2 184.750561    2 0.0244578213
[1] "Screened jogs for high O2 standard deviation:"
            [,1] [,2]         [,3]
 [1,] 184.417991    3 257.09718371
 [2,] 184.523686    2 137.95757726
 [3,] 184.607929   13   4.65408407
 [4,] 184.629108   13 128.05366698
 [5,] 184.644196    3  70.90885233
 [6,] 184.649441    2  69.54399287
 [7,] 184.654696    3  69.26671589
 [8,] 184.660050    5  66.04671454
 [9,] 184.665414    7  80.30318735
[10,] 184.670746   13  62.79162379
[11,] 184.676041   13  66.65538693
[12,] 184.681372    7  78.73448823
[13,] 184.686705    5  76.25544866
[14,] 184.692037    3  73.04279756
[15,] 184.697355    2  82.41375715
[16,] 184.702728    2  75.13801549
[17,] 184.708077    3  79.10404111
[18,] 184.713418    5  64.43895169
[19,] 184.718751    7  74.02403376
[20,] 184.724080   13  81.86944670
[21,] 184.729352   13  81.43750240
[22,] 184.734610    7  82.37100943
[23,] 184.739865    5  81.25246185
[24,] 184.745221    3  73.85731076
[25,] 184.750561    2  73.24392015
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]    -0.629 -1071.160  -830.262     0.937   401.013  -402.173     0.936
[8]   401.095  -402.289
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "plotting O2 flushing effect"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting o2 rollover"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"