Read 52200 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/140703a.mr"
[1] "Reading in data"
Read 13050 records
[1] "Approximately  58  jogs"
[1] "Fixing CO2 glitches"
Read 13050 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  CB10260"
[1] "Position  2    Cylinder  CC129271"
[1] "Position  3    Cylinder  CC161540"
[1] "Position  4    Cylinder  CB10128"
[1] "Position  5    Cylinder  CC129295"
[1] "Position  6    Cylinder  CB10141"
[1] "Position  7    Cylinder  CC129281"
[1] "Position  8    Cylinder  CC129293"
[1] "Position  9    Cylinder  CB10144"
[1] "Position  10    Cylinder  CB08910"
[1] "Position  11    Cylinder  CB08911"
[1] "Position  12    Cylinder  CC129307"
[1] "Position  13    Cylinder  OK30069"
Read 13 records
LIST_KNOWN: CC129271 CC161540 CC129295 CC129281 
LIST_UNKNOWN: OK30069 
Read 173 records
Read 54 records
Read 536 records
Read 2 items
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "Processing jog 3 at position 451"
[1] "Processing jog 4 at position 676"
[1] "Processing jog 5 at position 901"
[1] "Processing jog 6 at position 1126"
[1] "Processing jog 7 at position 1351"
[1] "Processing jog 8 at position 1576"
[1] "Processing jog 9 at position 1801"
[1] "Processing jog 10 at position 2026"
[1] "Processing jog 11 at position 2251"
[1] "Processing jog 12 at position 2476"
[1] "Processing jog 13 at position 2701"
[1] "Processing jog 14 at position 2926"
[1] "Processing jog 15 at position 3151"
[1] "Processing jog 16 at position 3376"
[1] "Processing jog 17 at position 3601"
[1] "Processing jog 18 at position 3826"
[1] "Processing jog 19 at position 4051"
[1] "Processing jog 20 at position 4276"
[1] "Processing jog 21 at position 4501"
[1] "Processing jog 22 at position 4726"
[1] "Processing jog 23 at position 4951"
[1] "Processing jog 24 at position 5176"
[1] "Processing jog 25 at position 5401"
[1] "Processing jog 26 at position 5626"
[1] "Processing jog 27 at position 5851"
[1] "Processing jog 28 at position 6076"
[1] "Processing jog 29 at position 6301"
[1] "Processing jog 30 at position 6526"
[1] "Processing jog 31 at position 6751"
[1] "Processing jog 32 at position 6976"
[1] "Processing jog 33 at position 7201"
[1] "Processing jog 34 at position 7426"
[1] "Processing jog 35 at position 7651"
[1] "Processing jog 36 at position 7876"
[1] "Processing jog 37 at position 8101"
[1] "Processing jog 38 at position 8326"
[1] "Processing jog 39 at position 8551"
[1] "Processing jog 40 at position 8776"
[1] "Processing jog 41 at position 9001"
[1] "Processing jog 42 at position 9226"
[1] "Processing jog 43 at position 9451"
[1] "Processing jog 44 at position 9676"
[1] "Processing jog 45 at position 9901"
[1] "Processing jog 46 at position 10126"
[1] "Processing jog 47 at position 10351"
[1] "Processing jog 48 at position 10576"
[1] "Processing jog 49 at position 10801"
[1] "Processing jog 50 at position 11026"
[1] "Processing jog 51 at position 11251"
[1] "Processing jog 52 at position 11476"
[1] "Processing jog 53 at position 11701"
[1] "Processing jog 54 at position 11926"
[1] "Processing jog 55 at position 12151"
[1] "Processing jog 56 at position 12376"
[1] "Processing jog 57 at position 12601"
[1] "Processing jog 58 at position 12826"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -0.640 -1081.981 -6715.368     0.954   401.128  -402.945     0.935   401.087 
          
 -402.955 
[1] "Screened jogs for high CO2 standard deviation:"
           [,1] [,2]         [,3]
[1,] 184.692037    3 0.0200587174
[2,] 184.750561    2 0.0248977477
[1] "Screened jogs for high O2 standard deviation:"
            [,1] [,2]         [,3]
 [1,] 184.417991    3 258.72353963
 [2,] 184.523686    2 138.83027496
 [3,] 184.607929   13   4.68352506
 [4,] 184.629108   13 128.86371412
 [5,] 184.644196    3  71.35741046
 [6,] 184.649441    2  69.98391711
 [7,] 184.654696    3  69.70488612
 [8,] 184.660050    5  66.46451556
 [9,] 184.665414    7  80.81117255
[10,] 184.670746   13  63.18883362
[11,] 184.676041   13  67.07703831
[12,] 184.681372    7  79.23255009
[13,] 184.686705    5  76.73782850
[14,] 184.692037    3  73.50485468
[15,] 184.697355    2  82.93509347
[16,] 184.702728    2  75.61332663
[17,] 184.708077    3  79.60444070
[18,] 184.713418    5  64.84658226
[19,] 184.718751    7  74.49229803
[20,] 184.724080   13  82.38733980
[21,] 184.729352   13  81.95266310
[22,] 184.734610    7  82.89207534
[23,] 184.739865    5  81.76645200
[24,] 184.745221    3  74.32452037
[25,] 184.750561    2  73.70724955
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]    -0.633 -1078.657  -827.410     0.954   401.137  -401.985     0.936
[8]   401.096  -402.289
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "plotting O2 flushing effect"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting o2 rollover"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"