Read 65700 records [1] "Analyzing /scr/raf/stephens/CFDAT/120202b.mr" [1] "Reading in data" Read 16425 records [1] "Approximately 73 jogs" [1] "Fixing CO2 glitches" Read 16425 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder CA07260" [1] "Position 2 Cylinder CC129307" [1] "Position 3 Cylinder CC339490" [1] "Position 4 Cylinder CC339495" [1] "Position 5 Cylinder CC129293" [1] "Position 6 Cylinder CB08905" [1] "Position 7 Cylinder CC129295" [1] "Position 8 Cylinder CC161540" [1] "Position 9 Cylinder JJ18942" [1] "Position 10 Cylinder CA07288" [1] "Position 11 Cylinder CC129281" [1] "Position 12 Cylinder CC332564" [1] "Position 13 Cylinder NA" Read 13 records LIST_KNOWN: CA07260 CC129307 CC129293 CC129295 CC161540 CA07288 CC129281 LIST_UNKNOWN: CA07260 CC339490 CC339495 CB08905 JJ18942 CA07288 Read 171 records Read 54 records Read 536 records Read 2 items [1] "Processing jog 1 at position 1" [1] "Processing jog 2 at position 226" [1] "Processing jog 3 at position 451" [1] "Processing jog 4 at position 676" [1] "Processing jog 5 at position 901" [1] "Processing jog 6 at position 1126" [1] "Processing jog 7 at position 1351" [1] "Processing jog 8 at position 1576" [1] "Processing jog 9 at position 1801" [1] "Processing jog 10 at position 2026" [1] "Processing jog 11 at position 2251" [1] "Processing jog 12 at position 2476" [1] "Processing jog 13 at position 2701" [1] "******** Skipping jog 13 at position 2701" [1] "Processing jog 14 at position 2926" [1] "******** Skipping jog 14 at position 2926" [1] "Processing jog 15 at position 3151" [1] "Processing jog 16 at position 3376" [1] "Processing jog 17 at position 3601" [1] "Processing jog 18 at position 3826" [1] "Processing jog 19 at position 4051" [1] "Processing jog 20 at position 4276" [1] "Processing jog 21 at position 4501" [1] "Processing jog 22 at position 4726" [1] "Processing jog 23 at position 4951" [1] "Processing jog 24 at position 5176" [1] "Processing jog 25 at position 5401" [1] "Processing jog 26 at position 5626" [1] "Processing jog 27 at position 5851" [1] "Processing jog 28 at position 6076" [1] "Processing jog 29 at position 6301" [1] "Processing jog 30 at position 6526" [1] "Processing jog 31 at position 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "Processing jog 40 at position 8776" [1] "Processing jog 41 at position 9001" [1] "Processing jog 42 at position 9226" [1] "Processing jog 43 at position 9451" [1] "Processing jog 44 at position 9676" [1] "Processing jog 45 at position 9901" [1] "Processing jog 46 at position 10126" [1] "Processing jog 47 at position 10351" [1] "Processing jog 48 at position 10576" [1] "Processing jog 49 at position 10801" [1] "Processing jog 50 at position 11026" [1] "Processing jog 51 at position 11251" [1] "Processing jog 52 at position 11476" [1] "Processing jog 53 at position 11701" [1] "Processing jog 54 at position 11926" [1] "Processing jog 55 at position 12151" [1] "Processing jog 56 at position 12376" [1] "Processing jog 57 at position 12601" [1] "Processing jog 58 at position 12826" [1] "Processing jog 59 at position 13051" [1] "Processing jog 60 at position 13276" [1] "Processing jog 61 at position 13501" [1] "Processing jog 62 at position 13726" [1] "Processing jog 63 at position 13951" [1] "Processing jog 64 at position 14176" [1] "Processing jog 65 at position 14401" [1] "Processing jog 66 at position 14626" [1] "Processing jog 67 at position 14851" [1] "Processing jog 68 at position 15076" [1] "Processing jog 69 at position 15301" [1] "Processing jog 70 at position 15526" [1] "Processing jog 71 at position 15751" [1] "Processing jog 72 at position 15976" [1] "Processing jog 73 at position 16201" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 x2 x1 -0.751 -1011.695 -3336.876 0.916 386.605 -385.478 0.915 386.725 -385.543 [1] "Screened jogs for high CO2 standard deviation:" [,1] [,2] [,3] [1,] 33.7408913 4 0.0203939946 [2,] 33.7640749 8 0.0205821660 [3,] 33.9566841 12 0.0635461412 [4,] 33.9618924 12 0.0585081474 [5,] 34.0828736 12 0.0925510251 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 33.7640749 8 4.93782549 [2,] 33.7864958 11 4.71896472 [3,] 33.8087608 11 5.05250047 [4,] 33.9566841 12 803.62751619 [5,] 33.9618924 12 1064.63971139 [6,] 34.0828736 12 801.02666137 [7,] 34.0880820 12 1062.48100595 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.752 -1011.768 -110.045 0.917 386.610 -384.704 0.916 [8] 386.730 -384.807 [1] "plotting CO2 timeseries" [1] "plotting O2 timeseries" [1] "plotting CO2 flushing effect" [1] "co2 slope effect zero adjustment fit did not converge for pos 3" [1] "plotting O2 flushing effect" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting SP-WT slope correction" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html"