Read 22500 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/120117a.mr"
[1] "Reading in data"
Read 5625 records
[1] "Approximately  25  jogs"
[1] "Fixing CO2 glitches"
Read 5625 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  NA"
[1] "Position  2    Cylinder  CC129307"
[1] "Position  3    Cylinder  CC129271"
[1] "Position  4    Cylinder  NA"
[1] "Position  5    Cylinder  CC129293"
[1] "Position  6    Cylinder  CB08911"
[1] "Position  7    Cylinder  CC129295"
[1] "Position  8    Cylinder  CC161540"
[1] "Position  9    Cylinder  CC339490"
[1] "Position  10    Cylinder  NA"
[1] "Position  11    Cylinder  CC129281"
[1] "Position  12    Cylinder  NA"
[1] "Position  13    Cylinder  NA"
Read 13 records
LIST_KNOWN: CC129307 CC129295 CC161540 CC129281 
LIST_UNKNOWN: CB08911 CC339490 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "Processing jog 3 at position 451"
[1] "Processing jog 4 at position 676"
[1] "Processing jog 5 at position 901"
[1] "Processing jog 6 at position 1126"
[1] "Processing jog 7 at position 1351"
[1] "Processing jog 8 at position 1576"
[1] "Processing jog 9 at position 1801"
[1] "Processing jog 10 at position 2026"
[1] "Processing jog 11 at position 2251"
[1] "Processing jog 12 at position 2476"
[1] "Processing jog 13 at position 2701"
[1] "Processing jog 14 at position 2926"
[1] "Processing jog 15 at position 3151"
[1] "Processing jog 16 at position 3376"
[1] "Processing jog 17 at position 3601"
[1] "Processing jog 18 at position 3826"
[1] "Processing jog 19 at position 4051"
[1] "Processing jog 20 at position 4276"
[1] "Processing jog 21 at position 4501"
[1] "Processing jog 22 at position 4726"
[1] "Processing jog 23 at position 4951"
[1] "Processing jog 24 at position 5176"
[1] "Processing jog 25 at position 5401"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -0.746 -1019.136 -4309.240     0.915   386.663  -385.883     0.914   386.778 
          
 -385.979 
[1] "Screened jogs for high CO2 standard deviation:"
         [,1] [,2]         [,3]
x2 17.6866998    6 0.0448569665
[1] "Screened jogs for high O2 standard deviation:"
        [,1] [,2]       [,3]
X 17.6866998    6 96.4002396
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]    -0.746 -1019.414  -351.509     0.915   386.660  -385.533     0.914
[8]   386.774  -385.636
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "plotting O2 flushing effect"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting o2 rollover"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"