Read 173696 records [1] "Analyzing /scr/raf/stephens/CFDAT/110217b.mr" [1] "Reading in data" Read 43424 records [1] "Approximately 193 jogs" [1] "Fixing CO2 glitches" Read 43424 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder OK30070" [1] "Position 2 Cylinder CC129281" [1] "Position 3 Cylinder CA07280" [1] "Position 4 Cylinder OK30053" [1] "Position 5 Cylinder CC129307" [1] "Position 6 Cylinder OK30054" [1] "Position 7 Cylinder CC129295" [1] "Position 8 Cylinder CA07276" [1] "Position 9 Cylinder OK30069" [1] "Position 10 Cylinder CC328853" [1] "Position 11 Cylinder CC328862" [1] "Position 12 Cylinder CC161540" [1] "Position 13 Cylinder NA" Read 13 records LIST_KNOWN: CC129281 CA07280 CC129307 CC129295 CA07276 CC161540 LIST_UNKNOWN: OK30070 CA07280 OK30053 OK30054 CA07276 OK30069 CC328853 CC328862 Read 171 records Read 54 records Read 536 records Read 2 items [1] "Processing jog 1 at position 1" [1] "Processing jog 2 at position 226" [1] "Processing jog 3 at position 451" [1] "Processing jog 4 at position 676" [1] "Processing jog 5 at position 901" [1] "Processing jog 6 at position 1126" [1] "Processing jog 7 at position 1351" [1] "Processing jog 8 at position 1576" [1] "Processing jog 9 at position 1801" [1] "Processing jog 10 at position 2026" [1] "Processing jog 11 at position 2251" [1] "Processing jog 12 at position 2476" [1] "Processing jog 13 at position 2701" [1] "Processing jog 14 at position 2926" [1] "Processing jog 15 at position 3151" [1] "Processing jog 16 at position 3376" [1] "Processing jog 17 at position 3601" [1] "Processing jog 18 at position 3826" [1] "Processing jog 19 at position 4051" [1] "Processing jog 20 at position 4276" [1] "Processing jog 21 at position 4501" [1] "Processing jog 22 at position 4726" [1] "Processing jog 23 at position 4951" [1] "Processing jog 24 at position 5176" [1] "Processing jog 25 at position 5401" [1] "Processing jog 26 at position 5626" [1] "Processing jog 27 at position 5851" [1] "Processing jog 28 at position 6076" [1] "Processing jog 29 at position 6301" [1] "Processing jog 30 at position 6526" [1] "Processing jog 31 at position 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "Processing jog 40 at position 8776" [1] "Processing jog 41 at position 9001" [1] "Processing jog 42 at position 9226" [1] "Processing jog 43 at position 9451" [1] "Processing jog 44 at position 9676" [1] "Processing jog 45 at position 9901" [1] "Processing jog 46 at position 10126" [1] "Processing jog 47 at position 10351" [1] "Processing jog 48 at position 10576" [1] "Processing jog 49 at position 10801" [1] "Processing jog 50 at position 11026" [1] "Processing jog 51 at position 11251" [1] "Processing jog 52 at position 11476" [1] "Processing jog 53 at position 11701" [1] "Processing jog 54 at position 11926" [1] "Processing jog 55 at position 12151" [1] "Processing jog 56 at position 12376" [1] "Processing jog 57 at position 12601" [1] "Processing jog 58 at position 12826" [1] "Processing jog 59 at position 13051" [1] "Processing jog 60 at position 13276" [1] "Processing jog 61 at position 13501" [1] "Processing jog 62 at position 13726" [1] "Processing jog 63 at position 13951" [1] "Processing jog 64 at position 14176" [1] "Processing jog 65 at position 14401" [1] "Processing jog 66 at position 14626" [1] "Processing jog 67 at position 14851" [1] "Processing jog 68 at position 15076" [1] "Processing jog 69 at position 15301" [1] "Processing jog 70 at position 15526" [1] "Processing jog 71 at position 15751" [1] "Processing jog 72 at position 15976" [1] "Processing jog 73 at position 16201" [1] "Processing jog 74 at position 16426" [1] "Processing jog 75 at position 16651" [1] "Processing jog 76 at position 16876" [1] "Processing jog 77 at position 17101" [1] "Processing jog 78 at position 17326" [1] "Processing jog 79 at position 17551" [1] "Processing jog 80 at position 17776" [1] "Processing jog 81 at position 18001" [1] "Processing jog 82 at position 18226" [1] "Processing jog 83 at position 18451" [1] "Processing jog 84 at position 18676" [1] "Processing jog 85 at position 18901" [1] "Processing jog 86 at position 19126" [1] "Processing jog 87 at position 19351" [1] "Processing jog 88 at position 19576" [1] "Processing jog 89 at position 19801" [1] "Processing jog 90 at position 20026" [1] "Processing jog 91 at position 20251" [1] "Processing jog 92 at position 20476" [1] "Processing jog 93 at position 20701" [1] "Processing jog 94 at position 20926" [1] "Processing jog 95 at position 21151" [1] "Processing jog 96 at position 21376" [1] "Processing jog 97 at position 21601" [1] "Processing jog 98 at position 21826" [1] "Processing jog 99 at position 22051" [1] "Processing jog 100 at position 22276" [1] "Processing jog 101 at position 22501" [1] "Processing jog 102 at position 22726" [1] "Processing jog 103 at position 22951" [1] "Processing jog 104 at position 23176" [1] "Processing jog 105 at position 23401" [1] "Processing jog 106 at position 23626" [1] "Processing jog 107 at position 23851" [1] "Processing jog 108 at position 24076" [1] "Processing jog 109 at position 24301" [1] "Processing jog 110 at position 24526" [1] "**************** missing data at 24526" [1] "Processing jog 111 at position 24750" [1] "Processing jog 112 at position 24975" [1] "Processing jog 113 at position 25200" [1] "Processing jog 114 at position 25425" [1] "Processing jog 115 at position 25650" [1] "Processing jog 116 at position 25875" [1] "Processing jog 117 at position 26100" [1] "Processing jog 118 at position 26325" [1] "Processing jog 119 at position 26550" [1] "Processing jog 120 at position 26775" [1] "Processing jog 121 at position 27000" [1] "Processing jog 122 at position 27225" [1] "Processing jog 123 at position 27450" [1] "Processing jog 124 at position 27675" [1] "Processing jog 125 at position 27900" [1] "Processing jog 126 at position 28125" [1] "Processing jog 127 at position 28350" [1] "Processing jog 128 at position 28575" [1] "Processing jog 129 at position 28800" [1] "Processing jog 130 at position 29025" [1] "Processing jog 131 at position 29250" [1] "Processing jog 132 at position 29475" [1] "Processing jog 133 at position 29700" [1] "Processing jog 134 at position 29925" [1] "Processing jog 135 at position 30150" [1] "Processing jog 136 at position 30375" [1] "Processing jog 137 at position 30600" [1] "Processing jog 138 at position 30825" [1] "Processing jog 139 at position 31050" [1] "Processing jog 140 at position 31275" [1] "Processing jog 141 at position 31500" [1] "Processing jog 142 at position 31725" [1] "Processing jog 143 at position 31950" [1] "Processing jog 144 at position 32175" [1] "Processing jog 145 at position 32400" [1] "Processing jog 146 at position 32625" [1] "Processing jog 147 at position 32850" [1] "Processing jog 148 at position 33075" [1] "Processing jog 149 at position 33300" [1] "Processing jog 150 at position 33525" [1] "Processing jog 151 at position 33750" [1] "Processing jog 152 at position 33975" [1] "Processing jog 153 at position 34200" [1] "Processing jog 154 at position 34425" [1] "Processing jog 155 at position 34650" [1] "Processing jog 156 at position 34875" [1] "Processing jog 157 at position 35100" [1] "Processing jog 158 at position 35325" [1] "Processing jog 159 at position 35550" [1] "Processing jog 160 at position 35775" [1] "Processing jog 161 at position 36000" [1] "Processing jog 162 at position 36225" [1] "Processing jog 163 at position 36450" [1] "Processing jog 164 at position 36675" [1] "Processing jog 165 at position 36900" [1] "Processing jog 166 at position 37125" [1] "Processing jog 167 at position 37350" [1] "Processing jog 168 at position 37575" [1] "Processing jog 169 at position 37800" [1] "Processing jog 170 at position 38025" [1] "Processing jog 171 at position 38250" [1] "Processing jog 172 at position 38475" [1] "Processing jog 173 at position 38700" [1] "Processing jog 174 at position 38925" [1] "Processing jog 175 at position 39150" [1] "Processing jog 176 at position 39375" [1] "Processing jog 177 at position 39600" [1] "Processing jog 178 at position 39825" [1] "Processing jog 179 at position 40050" [1] "Processing jog 180 at position 40275" [1] "Processing jog 181 at position 40500" [1] "Processing jog 182 at position 40725" [1] "Processing jog 183 at position 40950" [1] "Processing jog 184 at position 41175" [1] "Processing jog 185 at position 41400" [1] "Processing jog 186 at position 41625" [1] "Processing jog 187 at position 41850" [1] "Processing jog 188 at position 42075" [1] "Processing jog 189 at position 42300" [1] "Processing jog 190 at position 42525" [1] "Processing jog 191 at position 42750" [1] "Processing jog 192 at position 42975" [1] "Processing jog 193 at position 43200" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 x2 x1 -0.745 -556.058 -562.663 1.108 495.535 -492.892 1.102 495.334 -492.961 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 48.6605312 2 7.89439239 [2,] 48.6657754 1 6.94517152 [3,] 48.6710197 2 6.30569383 [4,] 48.6762957 3 7.21015028 [5,] 48.7183144 11 6.15047384 [6,] 48.7445000 9 6.00842665 [7,] 48.7974315 2 6.89381525 [8,] 48.8028330 3 6.07983998 [9,] 48.8505576 12 6.27815591 [10,] 48.9085743 2 6.40071882 [11,] 48.9351792 4 6.12439163 [12,] 48.9985514 9 6.74648599 [13,] 49.0621211 4 6.60877607 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.744 -556.133 268.599 1.107 495.520 -485.991 1.100 495.319 [9] -486.330 [1] "plotting CO2 timeseries" [1] "plotting O2 timeseries" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting SP-WT slope correction" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html"