Read 161455 records [1] "HR FILE LENGTH NOT MULTIPLE OF NSWITCH" [1] "Analyzing /scr/raf/stephens/CFDAT/101025z.mr" [1] "Reading in data" Read 40363 records [1] "Approximately 179 jogs" [1] "Fixing CO2 glitches" Read 40363 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder JJ9020" [1] "Position 2 Cylinder CC129281" [1] "Position 3 Cylinder CA07280" [1] "Position 4 Cylinder OK30069" [1] "Position 5 Cylinder CC129307" [1] "Position 6 Cylinder JJ8906" [1] "Position 7 Cylinder CC129295" [1] "Position 8 Cylinder CA07276" [1] "Position 9 Cylinder JJ12491" [1] "Position 10 Cylinder OK30070" [1] "Position 11 Cylinder JJ8852" [1] "Position 12 Cylinder CC161540" [1] "Position 13 Cylinder NA" Read 13 records LIST_KNOWN: CC129281 CA07280 CC129307 CC129295 CA07276 CC161540 LIST_UNKNOWN: JJ9020 CA07280 OK30069 JJ8906 CA07276 JJ12491 OK30070 JJ8852 Read 171 records Read 54 records Read 536 records Read 2 items [1] "Skipping final 22 records." [1] "Processing jog 1 at position 1" [1] "Processing jog 2 at position 226" [1] "Processing jog 3 at position 451" [1] "Processing jog 4 at position 676" [1] "Processing jog 5 at position 901" [1] "Processing jog 6 at position 1126" [1] "Processing jog 7 at position 1351" [1] "Processing jog 8 at position 1576" [1] "Processing jog 9 at position 1801" [1] "Processing jog 10 at position 2026" [1] "Processing jog 11 at position 2251" [1] "Processing jog 12 at position 2476" [1] "Processing jog 13 at position 2701" [1] "Processing jog 14 at position 2926" [1] "Processing jog 15 at position 3151" [1] "Processing jog 16 at position 3376" [1] "Processing jog 17 at position 3601" [1] "Processing jog 18 at position 3826" [1] "Processing jog 19 at position 4051" [1] "Processing jog 20 at position 4276" [1] "Processing jog 21 at position 4501" [1] "Processing jog 22 at position 4726" [1] "Processing jog 23 at position 4951" [1] "Processing jog 24 at position 5176" [1] "Processing jog 25 at position 5401" [1] "Processing jog 26 at position 5626" [1] "Processing jog 27 at position 5851" [1] "Processing jog 28 at position 6076" [1] "Processing jog 29 at position 6301" [1] "Processing jog 30 at position 6526" [1] "Processing jog 31 at position 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "**************** missing data at 8551" [1] "Processing jog 40 at position 8617" [1] "Processing jog 41 at position 8842" [1] "Processing jog 42 at position 9067" [1] "Processing jog 43 at position 9292" [1] "Processing jog 44 at position 9517" [1] "Processing jog 45 at position 9742" [1] "Processing jog 46 at position 9967" [1] "Processing jog 47 at position 10192" [1] "Processing jog 48 at position 10417" [1] "Processing jog 49 at position 10642" [1] "Processing jog 50 at position 10867" [1] "Processing jog 51 at position 11092" [1] "Processing jog 52 at position 11317" [1] "Processing jog 53 at position 11542" [1] "Processing jog 54 at position 11767" [1] "Processing jog 55 at position 11992" [1] "Processing jog 56 at position 12217" [1] "Processing jog 57 at position 12442" [1] "Processing jog 58 at position 12667" [1] "Processing jog 59 at position 12892" [1] "Processing jog 60 at position 13117" [1] "Processing jog 61 at position 13342" [1] "Processing jog 62 at position 13567" [1] "Processing jog 63 at position 13792" [1] "Processing jog 64 at position 14017" [1] "Processing jog 65 at position 14242" [1] "Processing jog 66 at position 14467" [1] "Processing jog 67 at position 14692" [1] "Processing jog 68 at position 14917" [1] "Processing jog 69 at position 15142" [1] "Processing jog 70 at position 15367" [1] "Processing jog 71 at position 15592" [1] "Processing jog 72 at position 15817" [1] "Processing jog 73 at position 16042" [1] "Processing jog 74 at position 16267" [1] "Processing jog 75 at position 16492" [1] "Processing jog 76 at position 16717" [1] "Processing jog 77 at position 16942" [1] "Processing jog 78 at position 17167" [1] "Processing jog 79 at position 17392" [1] "Processing jog 80 at position 17617" [1] "Processing jog 81 at position 17842" [1] "Processing jog 82 at position 18067" [1] "Processing jog 83 at position 18292" [1] "Processing jog 84 at position 18517" [1] "Processing jog 85 at position 18742" [1] "Processing jog 86 at position 18967" [1] "Processing jog 87 at position 19192" [1] "Processing jog 88 at position 19417" [1] "Processing jog 89 at position 19642" [1] "Processing jog 90 at position 19867" [1] "Processing jog 91 at position 20092" [1] "Processing jog 92 at position 20317" [1] "Processing jog 93 at position 20542" [1] "Processing jog 94 at position 20767" [1] "Processing jog 95 at position 20992" [1] "Processing jog 96 at position 21217" [1] "Processing jog 97 at position 21442" [1] "Processing jog 98 at position 21667" [1] "Processing jog 99 at position 21892" [1] "Processing jog 100 at position 22117" [1] "Processing jog 101 at position 22342" [1] "Processing jog 102 at position 22567" [1] "Processing jog 103 at position 22792" [1] "Processing jog 104 at position 23017" [1] "Processing jog 105 at position 23242" [1] "Processing jog 106 at position 23467" [1] "Processing jog 107 at position 23692" [1] "Processing jog 108 at position 23917" [1] "Processing jog 109 at position 24142" [1] "Processing jog 110 at position 24367" [1] "Processing jog 111 at position 24592" [1] "Processing jog 112 at position 24817" [1] "Processing jog 113 at position 25042" [1] "Processing jog 114 at position 25267" [1] "Processing jog 115 at position 25492" [1] "Processing jog 116 at position 25717" [1] "Processing jog 117 at position 25942" [1] "Processing jog 118 at position 26167" [1] "Processing jog 119 at position 26392" [1] "Processing jog 120 at position 26617" [1] "Processing jog 121 at position 26842" [1] "Processing jog 122 at position 27067" [1] "Processing jog 123 at position 27292" [1] "Processing jog 124 at position 27517" [1] "Processing jog 125 at position 27742" [1] "Processing jog 126 at position 27967" [1] "Processing jog 127 at position 28192" [1] "Processing jog 128 at position 28417" [1] "Processing jog 129 at position 28642" [1] "Processing jog 130 at position 28867" [1] "Processing jog 131 at position 29092" [1] "Processing jog 132 at position 29317" [1] "Processing jog 133 at position 29542" [1] "Processing jog 134 at position 29767" [1] "Processing jog 135 at position 29992" [1] "Processing jog 136 at position 30217" [1] "Processing jog 137 at position 30442" [1] "Processing jog 138 at position 30667" [1] "Processing jog 139 at position 30892" [1] "Processing jog 140 at position 31117" [1] "Processing jog 141 at position 31342" [1] "Processing jog 142 at position 31567" [1] "Processing jog 143 at position 31792" [1] "Processing jog 144 at position 32017" [1] "Processing jog 145 at position 32242" [1] "Processing jog 146 at position 32467" [1] "Processing jog 147 at position 32692" [1] "Processing jog 148 at position 32917" [1] "Processing jog 149 at position 33142" [1] "Processing jog 150 at position 33367" [1] "Processing jog 151 at position 33592" [1] "Processing jog 152 at position 33817" [1] "Processing jog 153 at position 34042" [1] "Processing jog 154 at position 34267" [1] "Processing jog 155 at position 34492" [1] "Processing jog 156 at position 34717" [1] "Processing jog 157 at position 34942" [1] "Processing jog 158 at position 35167" [1] "Processing jog 159 at position 35392" [1] "Processing jog 160 at position 35617" [1] "Processing jog 161 at position 35842" [1] "Processing jog 162 at position 36067" [1] "Processing jog 163 at position 36292" [1] "Processing jog 164 at position 36517" [1] "Processing jog 165 at position 36742" [1] "Processing jog 166 at position 36967" [1] "Processing jog 167 at position 37192" [1] "Processing jog 168 at position 37417" [1] "Processing jog 169 at position 37642" [1] "Processing jog 170 at position 37867" [1] "Processing jog 171 at position 38092" [1] "Processing jog 172 at position 38317" [1] "Processing jog 173 at position 38542" [1] "Processing jog 174 at position 38767" [1] "Processing jog 175 at position 38992" [1] "Processing jog 176 at position 39217" [1] "Processing jog 177 at position 39442" [1] "Processing jog 178 at position 39667" [1] "Processing jog 179 at position 39892" [1] "Processing jog 180 at position 40117" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 0.000 366.198 -17306134.692 1.154 493.360 x2 x1 -486.882 1.148 493.171 -486.951 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 299.135627 5 54.234542 [2,] 299.146285 7 1284.591122 [1] "Screened jogs for low O2 signal:" [,1] [,2] [,3] [1,] 299.140956 6 0.16558884000 [2,] 299.146285 7 0.04995022667 [3,] 299.151615 8 -0.00116076000 [4,] 299.156972 9 -0.00117966667 [5,] 299.162300 10 -0.00119286667 [6,] 299.167630 11 -0.00121474667 [7,] 299.172960 12 -0.00122050667 [8,] 299.178256 12 -0.00123397333 [9,] 299.183586 11 -0.00123601333 [10,] 299.188918 10 -0.00124562667 [11,] 299.194248 9 -0.00124524000 [12,] 299.199604 8 -0.00125796000 [13,] 299.204934 7 -0.00125288000 [14,] 299.210265 6 -0.00126480000 [15,] 299.215596 5 -0.00125554667 [16,] 299.220926 4 -0.00126537333 [17,] 299.226255 3 -0.00126577333 [18,] 299.231586 2 -0.00126376000 [19,] 299.236930 1 -0.00126136000 [20,] 299.242161 1 -0.00126769333 [21,] 299.247420 2 -0.00125818667 [22,] 299.252666 3 -0.00127072000 [23,] 299.257911 4 -0.00126349333 [24,] 299.263155 5 -0.00126728000 [25,] 299.268401 6 -0.00126130667 [26,] 299.273646 7 -0.00126850667 [27,] 299.278914 8 -0.00126245333 [28,] 299.284167 9 -0.00125933333 [29,] 299.289481 10 -0.00126890667 [30,] 299.294744 11 -0.00125792000 [31,] 299.299989 12 -0.00126574667 [32,] 299.305198 12 -0.00126129333 [33,] 299.310443 11 -0.00126269333 [34,] 299.315689 10 -0.00126730667 [35,] 299.320965 9 -0.00126110667 [36,] 299.326221 8 -0.00126946667 [37,] 299.331549 7 -0.00125936000 [38,] 299.336878 6 -0.00126709333 [39,] 299.342207 5 -0.00126352000 [40,] 299.347535 4 -0.00126754667 [41,] 299.352864 3 -0.00126526667 [42,] 299.358126 2 -0.00126076000 [43,] 299.363400 1 -0.00126928000 [44,] 299.368610 1 -0.00126074667 [45,] 299.373854 2 -0.00126202667 [46,] 299.379099 3 -0.00126394667 [47,] 299.384345 4 -0.00126045333 [48,] 299.389590 5 -0.00126366667 [49,] 299.394835 6 -0.00125873333 [50,] 299.400080 7 -0.00126674667 [51,] 299.405364 8 -0.00126008000 [52,] 299.410608 9 -0.00126560000 [53,] 299.415852 10 -0.00126561333 [54,] 299.421099 11 -0.00126232000 [55,] 299.426388 12 -0.00126452000 [56,] 299.431683 12 -0.00126288000 [57,] 299.437013 11 -0.00125936000 [58,] 299.442342 10 -0.00126901333 [59,] 299.447663 9 -0.00126137333 [60,] 299.452995 8 -0.00126168000 [61,] 299.458242 7 -0.00126316000 [62,] 299.463487 6 -0.00125801333 [63,] 299.468732 5 -0.00126829333 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.913 -547.504 -5478335.324 1.153 493.345 [6] -480.577 1.147 493.156 -480.901 [1] "plotting CO2 timeseries" [1] "plotting O2 timeseries" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "o2 slope effect zero adjustment fit did not converge for pos 1" [1] "o2 slope effect zero adjustment fit did not converge for pos 3" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting SP-WT slope correction" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html"