Read 222332 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/101018z.mr"
[1] "Reading in data"
Read 55583 records
[1] "Approximately  247  jogs"
[1] "Fixing CO2 glitches"
Read 55583 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  ND12795"
[1] "Position  2    Cylinder  CC129281"
[1] "Position  3    Cylinder  CC129293"
[1] "Position  4    Cylinder  OK30069"
[1] "Position  5    Cylinder  CC129307"
[1] "Position  6    Cylinder  OK30053"
[1] "Position  7    Cylinder  CC129295"
[1] "Position  8    Cylinder  CC129271"
[1] "Position  9    Cylinder  OK30054"
[1] "Position  10    Cylinder  OK30070"
[1] "Position  11    Cylinder  OK170199"
[1] "Position  12    Cylinder  CC161540"
[1] "Position  13    Cylinder  NA"
Read 13 records
LIST_KNOWN: CC129281 CC129293 CC129307 CC129295 CC129271 CC161540 
LIST_UNKNOWN: ND12795 OK30069 OK30053 OK30054 OK30070 OK170199 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Skipping final  223  records."
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "Processing jog 3 at position 451"
[1] "Processing jog 4 at position 676"
[1] "Processing jog 5 at position 901"
[1] "Processing jog 6 at position 1126"
[1] "Processing jog 7 at position 1351"
[1] "Processing jog 8 at position 1576"
[1] "Processing jog 9 at position 1801"
[1] "Processing jog 10 at position 2026"
[1] "Processing jog 11 at position 2251"
[1] "Processing jog 12 at position 2476"
[1] "Processing jog 13 at position 2701"
[1] "Processing jog 14 at position 2926"
[1] "Processing jog 15 at position 3151"
[1] "Processing jog 16 at position 3376"
[1] "Processing jog 17 at position 3601"
[1] "Processing jog 18 at position 3826"
[1] "Processing jog 19 at position 4051"
[1] "Processing jog 20 at position 4276"
[1] "Processing jog 21 at position 4501"
[1] "Processing jog 22 at position 4726"
[1] "Processing jog 23 at position 4951"
[1] "Processing jog 24 at position 5176"
[1] "Processing jog 25 at position 5401"
[1] "Processing jog 26 at position 5626"
[1] "Processing jog 27 at position 5851"
[1] "Processing jog 28 at position 6076"
[1] "Processing jog 29 at position 6301"
[1] "Processing jog 30 at position 6526"
[1] "Processing jog 31 at position 6751"
[1] "Processing jog 32 at position 6976"
[1] "Processing jog 33 at position 7201"
[1] "Processing jog 34 at position 7426"
[1] "Processing jog 35 at position 7651"
[1] "Processing jog 36 at position 7876"
[1] "Processing jog 37 at position 8101"
[1] "Processing jog 38 at position 8326"
[1] "Processing jog 39 at position 8551"
[1] "Processing jog 40 at position 8776"
[1] "Processing jog 41 at position 9001"
[1] "Processing jog 42 at position 9226"
[1] "Processing jog 43 at position 9451"
[1] "Processing jog 44 at position 9676"
[1] "Processing jog 45 at position 9901"
[1] "Processing jog 46 at position 10126"
[1] "Processing jog 47 at position 10351"
[1] "Processing jog 48 at position 10576"
[1] "Processing jog 49 at position 10801"
[1] "Processing jog 50 at position 11026"
[1] "Processing jog 51 at position 11251"
[1] "Processing jog 52 at position 11476"
[1] "Processing jog 53 at position 11701"
[1] "Processing jog 54 at position 11926"
[1] "Processing jog 55 at position 12151"
[1] "Processing jog 56 at position 12376"
[1] "Processing jog 57 at position 12601"
[1] "Processing jog 58 at position 12826"
[1] "Processing jog 59 at position 13051"
[1] "Processing jog 60 at position 13276"
[1] "Processing jog 61 at position 13501"
[1] "Processing jog 62 at position 13726"
[1] "Processing jog 63 at position 13951"
[1] "Processing jog 64 at position 14176"
[1] "Processing jog 65 at position 14401"
[1] "Processing jog 66 at position 14626"
[1] "Processing jog 67 at position 14851"
[1] "Processing jog 68 at position 15076"
[1] "Processing jog 69 at position 15301"
[1] "Processing jog 70 at position 15526"
[1] "Processing jog 71 at position 15751"
[1] "Processing jog 72 at position 15976"
[1] "Processing jog 73 at position 16201"
[1] "Processing jog 74 at position 16426"
[1] "Processing jog 75 at position 16651"
[1] "Processing jog 76 at position 16876"
[1] "Processing jog 77 at position 17101"
[1] "Processing jog 78 at position 17326"
[1] "Processing jog 79 at position 17551"
[1] "Processing jog 80 at position 17776"
[1] "Processing jog 81 at position 18001"
[1] "Processing jog 82 at position 18226"
[1] "Processing jog 83 at position 18451"
[1] "Processing jog 84 at position 18676"
[1] "Processing jog 85 at position 18901"
[1] "Processing jog 86 at position 19126"
[1] "Processing jog 87 at position 19351"
[1] "Processing jog 88 at position 19576"
[1] "Processing jog 89 at position 19801"
[1] "Processing jog 90 at position 20026"
[1] "Processing jog 91 at position 20251"
[1] "Processing jog 92 at position 20476"
[1] "Processing jog 93 at position 20701"
[1] "Processing jog 94 at position 20926"
[1] "Processing jog 95 at position 21151"
[1] "Processing jog 96 at position 21376"
[1] "Processing jog 97 at position 21601"
[1] "Processing jog 98 at position 21826"
[1] "Processing jog 99 at position 22051"
[1] "Processing jog 100 at position 22276"
[1] "Processing jog 101 at position 22501"
[1] "**************** missing data at  22501"
[1] "Processing jog 102 at position 22725"
[1] "Processing jog 103 at position 22950"
[1] "Processing jog 104 at position 23175"
[1] "Processing jog 105 at position 23400"
[1] "Processing jog 106 at position 23625"
[1] "Processing jog 107 at position 23850"
[1] "Processing jog 108 at position 24075"
[1] "Processing jog 109 at position 24300"
[1] "Processing jog 110 at position 24525"
[1] "Processing jog 111 at position 24750"
[1] "Processing jog 112 at position 24975"
[1] "Processing jog 113 at position 25200"
[1] "Processing jog 114 at position 25425"
[1] "Processing jog 115 at position 25650"
[1] "Processing jog 116 at position 25875"
[1] "Processing jog 117 at position 26100"
[1] "Processing jog 118 at position 26325"
[1] "Processing jog 119 at position 26550"
[1] "Processing jog 120 at position 26775"
[1] "Processing jog 121 at position 27000"
[1] "Processing jog 122 at position 27225"
[1] "Processing jog 123 at position 27450"
[1] "Processing jog 124 at position 27675"
[1] "Processing jog 125 at position 27900"
[1] "Processing jog 126 at position 28125"
[1] "Processing jog 127 at position 28350"
[1] "Processing jog 128 at position 28575"
[1] "Processing jog 129 at position 28800"
[1] "Processing jog 130 at position 29025"
[1] "Processing jog 131 at position 29250"
[1] "Processing jog 132 at position 29475"
[1] "Processing jog 133 at position 29700"
[1] "Processing jog 134 at position 29925"
[1] "Processing jog 135 at position 30150"
[1] "Processing jog 136 at position 30375"
[1] "Processing jog 137 at position 30600"
[1] "Processing jog 138 at position 30825"
[1] "Processing jog 139 at position 31050"
[1] "Processing jog 140 at position 31275"
[1] "Processing jog 141 at position 31500"
[1] "Processing jog 142 at position 31725"
[1] "Processing jog 143 at position 31950"
[1] "Processing jog 144 at position 32175"
[1] "Processing jog 145 at position 32400"
[1] "Processing jog 146 at position 32625"
[1] "Processing jog 147 at position 32850"
[1] "Processing jog 148 at position 33075"
[1] "Processing jog 149 at position 33300"
[1] "Processing jog 150 at position 33525"
[1] "Processing jog 151 at position 33750"
[1] "Processing jog 152 at position 33975"
[1] "Processing jog 153 at position 34200"
[1] "Processing jog 154 at position 34425"
[1] "Processing jog 155 at position 34650"
[1] "Processing jog 156 at position 34875"
[1] "Processing jog 157 at position 35100"
[1] "Processing jog 158 at position 35325"
[1] "Processing jog 159 at position 35550"
[1] "Processing jog 160 at position 35775"
[1] "Processing jog 161 at position 36000"
[1] "Processing jog 162 at position 36225"
[1] "Processing jog 163 at position 36450"
[1] "Processing jog 164 at position 36675"
[1] "Processing jog 165 at position 36900"
[1] "Processing jog 166 at position 37125"
[1] "Processing jog 167 at position 37350"
[1] "Processing jog 168 at position 37575"
[1] "Processing jog 169 at position 37800"
[1] "Processing jog 170 at position 38025"
[1] "Processing jog 171 at position 38250"
[1] "Processing jog 172 at position 38475"
[1] "Processing jog 173 at position 38700"
[1] "Processing jog 174 at position 38925"
[1] "Processing jog 175 at position 39150"
[1] "Processing jog 176 at position 39375"
[1] "Processing jog 177 at position 39600"
[1] "Processing jog 178 at position 39825"
[1] "Processing jog 179 at position 40050"
[1] "Processing jog 180 at position 40275"
[1] "Processing jog 181 at position 40500"
[1] "Processing jog 182 at position 40725"
[1] "Processing jog 183 at position 40950"
[1] "Processing jog 184 at position 41175"
[1] "Processing jog 185 at position 41400"
[1] "Processing jog 186 at position 41625"
[1] "Processing jog 187 at position 41850"
[1] "Processing jog 188 at position 42075"
[1] "Processing jog 189 at position 42300"
[1] "Processing jog 190 at position 42525"
[1] "Processing jog 191 at position 42750"
[1] "Processing jog 192 at position 42975"
[1] "Processing jog 193 at position 43200"
[1] "Processing jog 194 at position 43425"
[1] "Processing jog 195 at position 43650"
[1] "Processing jog 196 at position 43875"
[1] "Processing jog 197 at position 44100"
[1] "Processing jog 198 at position 44325"
[1] "Processing jog 199 at position 44550"
[1] "Processing jog 200 at position 44775"
[1] "Processing jog 201 at position 45000"
[1] "**************** missing data at  45000"
[1] "Processing jog 202 at position 45011"
[1] "Processing jog 203 at position 45236"
[1] "Processing jog 204 at position 45461"
[1] "Processing jog 205 at position 45686"
[1] "Processing jog 206 at position 45911"
[1] "Processing jog 207 at position 46136"
[1] "Processing jog 208 at position 46361"
[1] "Processing jog 209 at position 46586"
[1] "Processing jog 210 at position 46811"
[1] "Processing jog 211 at position 47036"
[1] "Processing jog 212 at position 47261"
[1] "Processing jog 213 at position 47486"
[1] "Processing jog 214 at position 47711"
[1] "Processing jog 215 at position 47936"
[1] "Processing jog 216 at position 48161"
[1] "Processing jog 217 at position 48386"
[1] "Processing jog 218 at position 48611"
[1] "Processing jog 219 at position 48836"
[1] "Processing jog 220 at position 49061"
[1] "Processing jog 221 at position 49286"
[1] "Processing jog 222 at position 49511"
[1] "Processing jog 223 at position 49736"
[1] "Processing jog 224 at position 49961"
[1] "Processing jog 225 at position 50186"
[1] "Processing jog 226 at position 50411"
[1] "Processing jog 227 at position 50636"
[1] "Processing jog 228 at position 50861"
[1] "Processing jog 229 at position 51086"
[1] "Processing jog 230 at position 51311"
[1] "Processing jog 231 at position 51536"
[1] "Processing jog 232 at position 51761"
[1] "Processing jog 233 at position 51986"
[1] "Processing jog 234 at position 52211"
[1] "Processing jog 235 at position 52436"
[1] "Processing jog 236 at position 52661"
[1] "Processing jog 237 at position 52886"
[1] "Processing jog 238 at position 53111"
[1] "Processing jog 239 at position 53336"
[1] "Processing jog 240 at position 53561"
[1] "Processing jog 241 at position 53786"
[1] "Processing jog 242 at position 54011"
[1] "Processing jog 243 at position 54236"
[1] "Processing jog 244 at position 54461"
[1] "Processing jog 245 at position 54686"
[1] "Processing jog 246 at position 54911"
[1] "Processing jog 247 at position 55136"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -0.679  -499.505    52.293     0.897   338.420  -332.977     0.897   338.563 
          
 -333.041 
[1] "Screened jogs for high CO2 standard deviation:"
            [,1] [,2]         [,3]
 [1,] 291.513396    2 0.0205759314
 [2,] 291.523925    4 0.0233708954
 [3,] 291.639373    4 0.0212373412
 [4,] 291.856631    2 0.0200017799
 [5,] 292.042414   11 0.0204857802
 [6,] 292.222742    4 0.0252815145
 [7,] 292.259835   11 0.0203263485
 [8,] 292.339499    4 0.0217253555
 [9,] 292.440454    2 0.0209099665
[10,] 292.573662    1 0.0301763434
[11,] 292.589398    4 0.0200472960
[12,] 292.705594    4 0.0232568992
[1] "Screened jogs for high O2 standard deviation:"
        [,1] [,2]       [,3]
X 291.555435   10 4.42166965
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]   -0.679 -499.551  387.825    0.898  338.414 -331.152    0.898  338.557
[9] -331.281
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "plotting O2 flushing effect"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting o2 rollover"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"