Read 168300 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/101011c.mr"
[1] "Reading in data"
Read 42075 records
[1] "Approximately  187  jogs"
[1] "Fixing CO2 glitches"
Read 42075 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  ND12795"
[1] "Position  2    Cylinder  CC129281"
[1] "Position  3    Cylinder  CC129293"
[1] "Position  4    Cylinder  OK30069"
[1] "Position  5    Cylinder  CC129307"
[1] "Position  6    Cylinder  OK30053"
[1] "Position  7    Cylinder  CC129295"
[1] "Position  8    Cylinder  CC129271"
[1] "Position  9    Cylinder  OK30054"
[1] "Position  10    Cylinder  OK30070"
[1] "Position  11    Cylinder  OK170199"
[1] "Position  12    Cylinder  CC161540"
[1] "Position  13    Cylinder  NA"
Read 13 records
LIST_KNOWN: CC129281 CC129293 CC129307 CC129295 CC129271 CC161540 
LIST_UNKNOWN: ND12795 OK30069 OK30053 OK30054 OK30070 OK170199 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "Processing jog 3 at position 451"
[1] "Processing jog 4 at position 676"
[1] "Processing jog 5 at position 901"
[1] "Processing jog 6 at position 1126"
[1] "Processing jog 7 at position 1351"
[1] "Processing jog 8 at position 1576"
[1] "Processing jog 9 at position 1801"
[1] "Processing jog 10 at position 2026"
[1] "Processing jog 11 at position 2251"
[1] "Processing jog 12 at position 2476"
[1] "Processing jog 13 at position 2701"
[1] "Processing jog 14 at position 2926"
[1] "Processing jog 15 at position 3151"
[1] "Processing jog 16 at position 3376"
[1] "Processing jog 17 at position 3601"
[1] "Processing jog 18 at position 3826"
[1] "Processing jog 19 at position 4051"
[1] "Processing jog 20 at position 4276"
[1] "Processing jog 21 at position 4501"
[1] "Processing jog 22 at position 4726"
[1] "Processing jog 23 at position 4951"
[1] "Processing jog 24 at position 5176"
[1] "Processing jog 25 at position 5401"
[1] "Processing jog 26 at position 5626"
[1] "Processing jog 27 at position 5851"
[1] "Processing jog 28 at position 6076"
[1] "Processing jog 29 at position 6301"
[1] "Processing jog 30 at position 6526"
[1] "Processing jog 31 at position 6751"
[1] "Processing jog 32 at position 6976"
[1] "Processing jog 33 at position 7201"
[1] "Processing jog 34 at position 7426"
[1] "Processing jog 35 at position 7651"
[1] "Processing jog 36 at position 7876"
[1] "Processing jog 37 at position 8101"
[1] "Processing jog 38 at position 8326"
[1] "Processing jog 39 at position 8551"
[1] "Processing jog 40 at position 8776"
[1] "Processing jog 41 at position 9001"
[1] "Processing jog 42 at position 9226"
[1] "Processing jog 43 at position 9451"
[1] "Processing jog 44 at position 9676"
[1] "Processing jog 45 at position 9901"
[1] "Processing jog 46 at position 10126"
[1] "Processing jog 47 at position 10351"
[1] "Processing jog 48 at position 10576"
[1] "Processing jog 49 at position 10801"
[1] "Processing jog 50 at position 11026"
[1] "Processing jog 51 at position 11251"
[1] "Processing jog 52 at position 11476"
[1] "Processing jog 53 at position 11701"
[1] "Processing jog 54 at position 11926"
[1] "Processing jog 55 at position 12151"
[1] "Processing jog 56 at position 12376"
[1] "Processing jog 57 at position 12601"
[1] "Processing jog 58 at position 12826"
[1] "Processing jog 59 at position 13051"
[1] "Processing jog 60 at position 13276"
[1] "Processing jog 61 at position 13501"
[1] "Processing jog 62 at position 13726"
[1] "Processing jog 63 at position 13951"
[1] "Processing jog 64 at position 14176"
[1] "Processing jog 65 at position 14401"
[1] "Processing jog 66 at position 14626"
[1] "Processing jog 67 at position 14851"
[1] "Processing jog 68 at position 15076"
[1] "Processing jog 69 at position 15301"
[1] "Processing jog 70 at position 15526"
[1] "Processing jog 71 at position 15751"
[1] "Processing jog 72 at position 15976"
[1] "Processing jog 73 at position 16201"
[1] "Processing jog 74 at position 16426"
[1] "Processing jog 75 at position 16651"
[1] "Processing jog 76 at position 16876"
[1] "Processing jog 77 at position 17101"
[1] "Processing jog 78 at position 17326"
[1] "Processing jog 79 at position 17551"
[1] "Processing jog 80 at position 17776"
[1] "Processing jog 81 at position 18001"
[1] "Processing jog 82 at position 18226"
[1] "Processing jog 83 at position 18451"
[1] "Processing jog 84 at position 18676"
[1] "Processing jog 85 at position 18901"
[1] "Processing jog 86 at position 19126"
[1] "Processing jog 87 at position 19351"
[1] "Processing jog 88 at position 19576"
[1] "Processing jog 89 at position 19801"
[1] "Processing jog 90 at position 20026"
[1] "Processing jog 91 at position 20251"
[1] "Processing jog 92 at position 20476"
[1] "Processing jog 93 at position 20701"
[1] "Processing jog 94 at position 20926"
[1] "Processing jog 95 at position 21151"
[1] "Processing jog 96 at position 21376"
[1] "Processing jog 97 at position 21601"
[1] "Processing jog 98 at position 21826"
[1] "Processing jog 99 at position 22051"
[1] "Processing jog 100 at position 22276"
[1] "Processing jog 101 at position 22501"
[1] "Processing jog 102 at position 22726"
[1] "Processing jog 103 at position 22951"
[1] "Processing jog 104 at position 23176"
[1] "Processing jog 105 at position 23401"
[1] "Processing jog 106 at position 23626"
[1] "Processing jog 107 at position 23851"
[1] "Processing jog 108 at position 24076"
[1] "Processing jog 109 at position 24301"
[1] "Processing jog 110 at position 24526"
[1] "Processing jog 111 at position 24751"
[1] "Processing jog 112 at position 24976"
[1] "Processing jog 113 at position 25201"
[1] "Processing jog 114 at position 25426"
[1] "Processing jog 115 at position 25651"
[1] "Processing jog 116 at position 25876"
[1] "Processing jog 117 at position 26101"
[1] "Processing jog 118 at position 26326"
[1] "Processing jog 119 at position 26551"
[1] "Processing jog 120 at position 26776"
[1] "Processing jog 121 at position 27001"
[1] "Processing jog 122 at position 27226"
[1] "Processing jog 123 at position 27451"
[1] "Processing jog 124 at position 27676"
[1] "Processing jog 125 at position 27901"
[1] "Processing jog 126 at position 28126"
[1] "Processing jog 127 at position 28351"
[1] "Processing jog 128 at position 28576"
[1] "Processing jog 129 at position 28801"
[1] "Processing jog 130 at position 29026"
[1] "Processing jog 131 at position 29251"
[1] "Processing jog 132 at position 29476"
[1] "Processing jog 133 at position 29701"
[1] "Processing jog 134 at position 29926"
[1] "Processing jog 135 at position 30151"
[1] "Processing jog 136 at position 30376"
[1] "Processing jog 137 at position 30601"
[1] "Processing jog 138 at position 30826"
[1] "Processing jog 139 at position 31051"
[1] "Processing jog 140 at position 31276"
[1] "Processing jog 141 at position 31501"
[1] "Processing jog 142 at position 31726"
[1] "Processing jog 143 at position 31951"
[1] "Processing jog 144 at position 32176"
[1] "Processing jog 145 at position 32401"
[1] "Processing jog 146 at position 32626"
[1] "Processing jog 147 at position 32851"
[1] "Processing jog 148 at position 33076"
[1] "Processing jog 149 at position 33301"
[1] "Processing jog 150 at position 33526"
[1] "Processing jog 151 at position 33751"
[1] "Processing jog 152 at position 33976"
[1] "Processing jog 153 at position 34201"
[1] "Processing jog 154 at position 34426"
[1] "Processing jog 155 at position 34651"
[1] "Processing jog 156 at position 34876"
[1] "Processing jog 157 at position 35101"
[1] "Processing jog 158 at position 35326"
[1] "Processing jog 159 at position 35551"
[1] "Processing jog 160 at position 35776"
[1] "Processing jog 161 at position 36001"
[1] "Processing jog 162 at position 36226"
[1] "Processing jog 163 at position 36451"
[1] "Processing jog 164 at position 36676"
[1] "Processing jog 165 at position 36901"
[1] "Processing jog 166 at position 37126"
[1] "Processing jog 167 at position 37351"
[1] "Processing jog 168 at position 37576"
[1] "Processing jog 169 at position 37801"
[1] "Processing jog 170 at position 38026"
[1] "Processing jog 171 at position 38251"
[1] "Processing jog 172 at position 38476"
[1] "Processing jog 173 at position 38701"
[1] "Processing jog 174 at position 38926"
[1] "Processing jog 175 at position 39151"
[1] "Processing jog 176 at position 39376"
[1] "Processing jog 177 at position 39601"
[1] "Processing jog 178 at position 39826"
[1] "Processing jog 179 at position 40051"
[1] "Processing jog 180 at position 40276"
[1] "Processing jog 181 at position 40501"
[1] "Processing jog 182 at position 40726"
[1] "Processing jog 183 at position 40951"
[1] "Processing jog 184 at position 41176"
[1] "Processing jog 185 at position 41401"
[1] "Processing jog 186 at position 41626"
[1] "Processing jog 187 at position 41851"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -0.654  -496.331    66.136     0.897   338.437  -332.939     0.896   338.580 
          
 -333.004 
[1] "Screened jogs for high CO2 standard deviation:"
           [,1] [,2]         [,3]
[1,] 284.760412    4 0.0250397255
[2,] 284.776290    7 0.0218499511
[3,] 284.781613    8 0.0210597651
[4,] 284.888112    4 0.0216701226
[5,] 285.360937    4 0.0209586658
[1] "Screened jogs for high O2 standard deviation:"
           [,1] [,2]        [,3]
[1,] 284.898807    6  7.53337218
[2,] 284.909464    8  6.99268421
[3,] 284.914794    9  6.38419809
[4,] 284.920126   10  4.20573611
[5,] 284.925457   11  7.04872308
[6,] 284.946600   10  4.45057926
[7,] 284.999831    1 76.10005860
[8,] 285.010335    3  4.09932739
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]   -0.654 -496.164  389.900    0.896  338.441 -331.031    0.896  338.584
[9] -331.160
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "plotting O2 flushing effect"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting o2 rollover"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"