Read 44096 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/091022a.mr"
[1] "Reading in data"
Read 11024 records
[1] "Approximately  49  jogs"
[1] "Fixing CO2 glitches"
Read 11024 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  NA"
[1] "Position  2    Cylinder  CC129281"
[1] "Position  3    Cylinder  CC129293"
[1] "Position  4    Cylinder  CC177837"
[1] "Position  5    Cylinder  CC129307"
[1] "Position  6    Cylinder  JA02103"
[1] "Position  7    Cylinder  CC129295"
[1] "Position  8    Cylinder  CC129271"
[1] "Position  9    Cylinder  CC177841"
[1] "Position  10    Cylinder  NA"
[1] "Position  11    Cylinder  CC178444"
[1] "Position  12    Cylinder  CC161540"
[1] "Position  13    Cylinder  NA"
Read 13 records
LIST_KNOWN: CC129281 CC129307 CC129295 CC129271 CC161540 
LIST_UNKNOWN: CC177837 CC177841 CC178444 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "Processing jog 3 at position 451"
[1] "Processing jog 4 at position 676"
[1] "Processing jog 5 at position 901"
[1] "Processing jog 6 at position 1126"
[1] "Processing jog 7 at position 1351"
[1] "Processing jog 8 at position 1576"
[1] "Processing jog 9 at position 1801"
[1] "Processing jog 10 at position 2026"
[1] "**************** missing data at  2026"
[1] "Processing jog 11 at position 2250"
[1] "Processing jog 12 at position 2475"
[1] "Processing jog 13 at position 2700"
[1] "Processing jog 14 at position 2925"
[1] "Processing jog 15 at position 3150"
[1] "Processing jog 16 at position 3375"
[1] "Processing jog 17 at position 3600"
[1] "Processing jog 18 at position 3825"
[1] "Processing jog 19 at position 4050"
[1] "Processing jog 20 at position 4275"
[1] "Processing jog 21 at position 4500"
[1] "Processing jog 22 at position 4725"
[1] "Processing jog 23 at position 4950"
[1] "Processing jog 24 at position 5175"
[1] "Processing jog 25 at position 5400"
[1] "Processing jog 26 at position 5625"
[1] "Processing jog 27 at position 5850"
[1] "Processing jog 28 at position 6075"
[1] "Processing jog 29 at position 6300"
[1] "Processing jog 30 at position 6525"
[1] "Processing jog 31 at position 6750"
[1] "Processing jog 32 at position 6975"
[1] "Processing jog 33 at position 7200"
[1] "Processing jog 34 at position 7425"
[1] "Processing jog 35 at position 7650"
[1] "Processing jog 36 at position 7875"
[1] "Processing jog 37 at position 8100"
[1] "Processing jog 38 at position 8325"
[1] "Processing jog 39 at position 8550"
[1] "Processing jog 40 at position 8775"
[1] "Processing jog 41 at position 9000"
[1] "Processing jog 42 at position 9225"
[1] "Processing jog 43 at position 9450"
[1] "Processing jog 44 at position 9675"
[1] "Processing jog 45 at position 9900"
[1] "Processing jog 46 at position 10125"
[1] "Processing jog 47 at position 10350"
[1] "Processing jog 48 at position 10575"
[1] "Processing jog 49 at position 10800"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -0.643  -534.681 -1273.196     0.968   373.221  -373.196     0.968   373.351 
          
 -373.301 
[1] "Screened jogs for high O2 standard deviation:"
           [,1] [,2]        [,3]
[1,] 295.780073    4 10.92329102
[2,] 295.785321    2  4.26514330
[3,] 295.790600    4  4.07402770
[4,] 295.832857   11  5.35684996
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]   -0.643 -534.721   90.224    0.968  373.219 -372.731    0.968  373.349
[9] -372.851
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "plotting O2 flushing effect"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting o2 rollover"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"