Read 87280 records [1] "Analyzing /scr/raf/stephens/CFDAT/091014a.mr" [1] "Reading in data" Read 21820 records [1] "Approximately 97 jogs" [1] "Fixing CO2 glitches" Read 21820 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder OK30069" [1] "Position 2 Cylinder OK30070" [1] "Position 3 Cylinder CC129281" [1] "Position 4 Cylinder OK30054" [1] "Position 5 Cylinder CC129307" [1] "Position 6 Cylinder OK30055" [1] "Position 7 Cylinder CC129295" [1] "Position 8 Cylinder CC129271" [1] "Position 9 Cylinder OK170199" [1] "Position 10 Cylinder OK30053" [1] "Position 11 Cylinder OK30057" [1] "Position 12 Cylinder CC161540" [1] "Position 13 Cylinder NA" Read 13 records LIST_KNOWN: CC129281 CC129307 CC129295 CC129271 CC161540 LIST_UNKNOWN: OK30069 OK30070 OK30054 OK30055 OK170199 OK30053 OK30057 Read 171 records Read 54 records Read 536 records Read 2 items [1] "Skipping initial 221 records." [1] "Processing jog 1 at position 222" [1] "Processing jog 2 at position 447" [1] "Processing jog 3 at position 672" [1] "Processing jog 4 at position 897" [1] "Processing jog 5 at position 1122" [1] "Processing jog 6 at position 1347" [1] "Processing jog 7 at position 1572" [1] "Processing jog 8 at position 1797" [1] "Processing jog 9 at position 2022" [1] "Processing jog 10 at position 2247" [1] "Processing jog 11 at position 2472" [1] "Processing jog 12 at position 2697" [1] "Processing jog 13 at position 2922" [1] "Processing jog 14 at position 3147" [1] "Processing jog 15 at position 3372" [1] "Processing jog 16 at position 3597" [1] "Processing jog 17 at position 3822" [1] "Processing jog 18 at position 4047" [1] "Processing jog 19 at position 4272" [1] "Processing jog 20 at position 4497" [1] "Processing jog 21 at position 4722" [1] "Processing jog 22 at position 4947" [1] "Processing jog 23 at position 5172" [1] "Processing jog 24 at position 5397" [1] "Processing jog 25 at position 5622" [1] "Processing jog 26 at position 5847" [1] "Processing jog 27 at position 6072" [1] "Processing jog 28 at position 6297" [1] "Processing jog 29 at position 6522" [1] "Processing jog 30 at position 6747" [1] "Processing jog 31 at position 6972" [1] "Processing jog 32 at position 7197" [1] "Processing jog 33 at position 7422" [1] "Processing jog 34 at position 7647" [1] "Processing jog 35 at position 7872" [1] "Processing jog 36 at position 8097" [1] "Processing jog 37 at position 8322" [1] "Processing jog 38 at position 8547" [1] "Processing jog 39 at position 8772" [1] "Processing jog 40 at position 8997" [1] "Processing jog 41 at position 9222" [1] "Processing jog 42 at position 9447" [1] "Processing jog 43 at position 9672" [1] "Processing jog 44 at position 9897" [1] "Processing jog 45 at position 10122" [1] "Processing jog 46 at position 10347" [1] "Processing jog 47 at position 10572" [1] "Processing jog 48 at position 10797" [1] "Processing jog 49 at position 11022" [1] "Processing jog 50 at position 11247" [1] "Processing jog 51 at position 11472" [1] "Processing jog 52 at position 11697" [1] "Processing jog 53 at position 11922" [1] "Processing jog 54 at position 12147" [1] "Processing jog 55 at position 12372" [1] "Processing jog 56 at position 12597" [1] "Processing jog 57 at position 12822" [1] "Processing jog 58 at position 13047" [1] "Processing jog 59 at position 13272" [1] "Processing jog 60 at position 13497" [1] "Processing jog 61 at position 13722" [1] "Processing jog 62 at position 13947" [1] "Processing jog 63 at position 14172" [1] "Processing jog 64 at position 14397" [1] "Processing jog 65 at position 14622" [1] "Processing jog 66 at position 14847" [1] "Processing jog 67 at position 15072" [1] "Processing jog 68 at position 15297" [1] "Processing jog 69 at position 15522" [1] "Processing jog 70 at position 15747" [1] "Processing jog 71 at position 15972" [1] "Processing jog 72 at position 16197" [1] "Processing jog 73 at position 16422" [1] "**************** missing data at 16422" [1] "Processing jog 74 at position 16646" [1] "Processing jog 75 at position 16871" [1] "Processing jog 76 at position 17096" [1] "Processing jog 77 at position 17321" [1] "Processing jog 78 at position 17546" [1] "Processing jog 79 at position 17771" [1] "Processing jog 80 at position 17996" [1] "Processing jog 81 at position 18221" [1] "Processing jog 82 at position 18446" [1] "Processing jog 83 at position 18671" [1] "Processing jog 84 at position 18896" [1] "Processing jog 85 at position 19121" [1] "Processing jog 86 at position 19346" [1] "Processing jog 87 at position 19571" [1] "Processing jog 88 at position 19796" [1] "Processing jog 89 at position 20021" [1] "Processing jog 90 at position 20246" [1] "Processing jog 91 at position 20471" [1] "Processing jog 92 at position 20696" [1] "Processing jog 93 at position 20921" [1] "Processing jog 94 at position 21146" [1] "Processing jog 95 at position 21371" [1] "Processing jog 96 at position 21596" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 x2 x1 -0.633 -519.133 -1152.168 0.971 373.450 -373.439 0.970 373.579 -373.544 [1] "Screened jogs for high CO2 standard deviation:" [,1] [,2] [,3] [1,] 287.741327 1 0.0303361279 [2,] 287.757062 4 0.0394228712 [3,] 287.767551 6 0.0567681846 [4,] 287.783316 9 0.0576516269 [5,] 287.793805 11 0.0590611601 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 287.783316 9 15.9295534 [2,] 287.793805 11 23.3136878 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.632 -519.165 110.342 0.971 373.450 -373.002 0.970 373.580 [9] -373.122 [1] "plotting CO2 timeseries" [1] "plotting O2 timeseries" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "o2 slope effect zero adjustment fit did not converge for pos 6" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting SP-WT slope correction" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html"