Read 65700 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/090219a.mr"
[1] "Reading in data"
Read 16425 records
[1] "Approximately  73  jogs"
[1] "Fixing CO2 glitches"
Read 16425 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  OK30057"
[1] "Position  2    Cylinder  CC129271"
[1] "Position  3    Cylinder  CC161540"
[1] "Position  4    Cylinder  OK30070"
[1] "Position  5    Cylinder  CC129307"
[1] "Position  6    Cylinder  OK30069"
[1] "Position  7    Cylinder  OK30055"
[1] "Position  8    Cylinder  CC129293"
[1] "Position  9    Cylinder  OK170199"
[1] "Position  10    Cylinder  OK30053"
[1] "Position  11    Cylinder  OK30054"
[1] "Position  12    Cylinder  CC129295"
[1] "Position  13    Cylinder  NA"
Read 13 records
LIST_KNOWN: CC129271 CC161540 CC129307 CC129293 CC129295 
LIST_UNKNOWN: OK30057 OK30070 OK30069 OK30055 OK170199 OK30053 OK30054 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "Processing jog 3 at position 451"
[1] "Processing jog 4 at position 676"
[1] "Processing jog 5 at position 901"
[1] "Processing jog 6 at position 1126"
[1] "Processing jog 7 at position 1351"
[1] "Processing jog 8 at position 1576"
[1] "Processing jog 9 at position 1801"
[1] "Processing jog 10 at position 2026"
[1] "Processing jog 11 at position 2251"
[1] "Processing jog 12 at position 2476"
[1] "Processing jog 13 at position 2701"
[1] "Processing jog 14 at position 2926"
[1] "Processing jog 15 at position 3151"
[1] "Processing jog 16 at position 3376"
[1] "Processing jog 17 at position 3601"
[1] "Processing jog 18 at position 3826"
[1] "Processing jog 19 at position 4051"
[1] "Processing jog 20 at position 4276"
[1] "Processing jog 21 at position 4501"
[1] "Processing jog 22 at position 4726"
[1] "Processing jog 23 at position 4951"
[1] "Processing jog 24 at position 5176"
[1] "Processing jog 25 at position 5401"
[1] "Processing jog 26 at position 5626"
[1] "Processing jog 27 at position 5851"
[1] "Processing jog 28 at position 6076"
[1] "Processing jog 29 at position 6301"
[1] "Processing jog 30 at position 6526"
[1] "Processing jog 31 at position 6751"
[1] "Processing jog 32 at position 6976"
[1] "Processing jog 33 at position 7201"
[1] "Processing jog 34 at position 7426"
[1] "Processing jog 35 at position 7651"
[1] "Processing jog 36 at position 7876"
[1] "Processing jog 37 at position 8101"
[1] "Processing jog 38 at position 8326"
[1] "Processing jog 39 at position 8551"
[1] "Processing jog 40 at position 8776"
[1] "Processing jog 41 at position 9001"
[1] "Processing jog 42 at position 9226"
[1] "Processing jog 43 at position 9451"
[1] "Processing jog 44 at position 9676"
[1] "Processing jog 45 at position 9901"
[1] "Processing jog 46 at position 10126"
[1] "Processing jog 47 at position 10351"
[1] "Processing jog 48 at position 10576"
[1] "Processing jog 49 at position 10801"
[1] "Processing jog 50 at position 11026"
[1] "Processing jog 51 at position 11251"
[1] "Processing jog 52 at position 11476"
[1] "Processing jog 53 at position 11701"
[1] "Processing jog 54 at position 11926"
[1] "Processing jog 55 at position 12151"
[1] "Processing jog 56 at position 12376"
[1] "Processing jog 57 at position 12601"
[1] "Processing jog 58 at position 12826"
[1] "Processing jog 59 at position 13051"
[1] "Processing jog 60 at position 13276"
[1] "Processing jog 61 at position 13501"
[1] "Processing jog 62 at position 13726"
[1] "Processing jog 63 at position 13951"
[1] "Processing jog 64 at position 14176"
[1] "Processing jog 65 at position 14401"
[1] "Processing jog 66 at position 14626"
[1] "Processing jog 67 at position 14851"
[1] "Processing jog 68 at position 15076"
[1] "Processing jog 69 at position 15301"
[1] "Processing jog 70 at position 15526"
[1] "Processing jog 71 at position 15751"
[1] "Processing jog 72 at position 15976"
[1] "Processing jog 73 at position 16201"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -0.637  -570.774  -245.489     1.135   494.521  -490.027     1.129   494.319 
          
 -490.078 
[1] "Screened jogs for high O2 standard deviation:"
            [,1] [,2]       [,3]
 [1,] 50.5239943    4 11.3214517
 [2,] 50.5295237    5 11.2694825
 [3,] 50.5350397    6 13.9148092
 [4,] 50.5404989    7 14.1000514
 [5,] 50.5460268    8 14.7108304
 [6,] 50.5513343    9 12.7256022
 [7,] 50.5566170   10 13.6732261
 [8,] 50.5618741   11 15.9755918
 [9,] 50.5671316   12 17.7709440
[10,] 50.5723875   12 17.1814975
[11,] 50.5777121   11 18.9908081
[12,] 50.5829989   10 20.0548108
[13,] 50.5882655    9 17.8892268
[14,] 50.5935648    8 22.4361406
[15,] 50.5988833    7 18.9852049
[16,] 50.6042189    6 20.2487510
[17,] 50.6094643    5 16.3840320
[18,] 50.6147098    4 15.1238023
[19,] 50.6199673    3 15.7511469
[20,] 50.6252214    2 14.7288206
[21,] 50.6304658    1 14.1275448
[22,] 50.6356742    1 14.1202836
[23,] 50.6409185    2 15.5302347
[24,] 50.6461641    3 14.4602845
[25,] 50.6514094    4 15.6526565
[26,] 50.6566548    5 17.0108869
[27,] 50.6619118    6 15.3339205
[28,] 50.6671805    7 16.7085502
[29,] 50.6724250    8 14.2921040
[30,] 50.6776703    9 13.7522771
[31,] 50.6829146   10 14.5470749
[32,] 50.6881599   11 14.7120884
[33,] 50.6934054   12 12.7343560
[34,] 50.6986139   12 12.8489077
[35,] 50.7038670   11 14.0337821
[36,] 50.7091407   10 13.9324831
[37,] 50.7143862    9 15.6946901
[38,] 50.7196315    8 12.6734212
[39,] 50.7248771    7 12.9021225
[40,] 50.7301213    6 13.1361322
[41,] 50.7353656    5 13.4381475
[42,] 50.7406099    4 13.1783962
[43,] 50.7458599    3 12.8743520
[44,] 50.7511367    2 14.7885732
[45,] 50.7563845    1 12.7946730
[46,] 50.7615929    1 14.2599379
[47,] 50.7668373    2 12.7099043
[48,] 50.7720815    3 13.1450119
[49,] 50.7773270    4 12.9215091
[50,] 50.7825713    5 12.1141260
[51,] 50.7878183    6 11.2647655
[52,] 50.7931527    7 12.1261692
[53,] 50.7984798    8 12.9453638
[54,] 50.8037267    9 11.4707631
[55,] 50.8089711   10 12.4304766
[56,] 50.8142153   11 12.4493938
[57,] 50.8194595   12 12.8356393
[58,] 50.8246681   12 13.5491183
[59,] 50.8299125   11 12.0695352
[60,] 50.8351902   10 12.5714592
[61,] 50.8404379    9 11.4163028
[62,] 50.8456822    8 11.5612801
[63,] 50.8509265    7 13.8868903
[64,] 50.8561709    6 12.3680989
[65,] 50.8614163    5 15.0337529
[66,] 50.8666606    4 11.7297852
[67,] 50.8719049    3 12.0649894
[68,] 50.8771885    2 11.0732252
[69,] 50.8824363    1 11.5743391
[1] "All knowns in pos 5 screened for O2 - not using"
[1] "All knowns in pos 8 screened for O2 - not using"
[1] "All knowns in pos 12 screened for O2 - not using"
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]   -0.638 -566.877  366.723    1.133  494.500 -483.950    1.127  494.299
[9] -484.265
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "plotting O2 flushing effect"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"