Read 60296 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/081201a.mr"
[1] "Reading in data"
Read 15074 records
[1] "Approximately  67  jogs"
[1] "Fixing CO2 glitches"
Read 15074 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  CA07280"
[1] "Position  2    Cylinder  ND19681"
[1] "Position  3    Cylinder  CA07260"
[1] "Position  4    Cylinder  NA"
[1] "Position  5    Cylinder  ND20887"
[1] "Position  6    Cylinder  CA07299"
[1] "Position  7    Cylinder  ND19273"
[1] "Position  8    Cylinder  ND19529"
[1] "Position  9    Cylinder  CA07288"
[1] "Position  10    Cylinder  CA07276"
[1] "Position  11    Cylinder  ND20050"
[1] "Position  12    Cylinder  ND19517"
[1] "Position  13    Cylinder  NA"
Read 13 records
LIST_KNOWN: ND19681 ND20887 ND19273 ND19529 ND20050 ND19517 
LIST_UNKNOWN: CA07280 CA07260 CA07299 CA07288 CA07276 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "Processing jog 3 at position 451"
[1] "Processing jog 4 at position 676"
[1] "Processing jog 5 at position 901"
[1] "Processing jog 6 at position 1126"
[1] "Processing jog 7 at position 1351"
[1] "Processing jog 8 at position 1576"
[1] "Processing jog 9 at position 1801"
[1] "Processing jog 10 at position 2026"
[1] "Processing jog 11 at position 2251"
[1] "Processing jog 12 at position 2476"
[1] "Processing jog 13 at position 2701"
[1] "Processing jog 14 at position 2926"
[1] "Processing jog 15 at position 3151"
[1] "Processing jog 16 at position 3376"
[1] "Processing jog 17 at position 3601"
[1] "Processing jog 18 at position 3826"
[1] "Processing jog 19 at position 4051"
[1] "Processing jog 20 at position 4276"
[1] "Processing jog 21 at position 4501"
[1] "Processing jog 22 at position 4726"
[1] "Processing jog 23 at position 4951"
[1] "Processing jog 24 at position 5176"
[1] "Processing jog 25 at position 5401"
[1] "Processing jog 26 at position 5626"
[1] "Processing jog 27 at position 5851"
[1] "Processing jog 28 at position 6076"
[1] "Processing jog 29 at position 6301"
[1] "Processing jog 30 at position 6526"
[1] "Processing jog 31 at position 6751"
[1] "Processing jog 32 at position 6976"
[1] "Processing jog 33 at position 7201"
[1] "Processing jog 34 at position 7426"
[1] "Processing jog 35 at position 7651"
[1] "Processing jog 36 at position 7876"
[1] "Processing jog 37 at position 8101"
[1] "Processing jog 38 at position 8326"
[1] "Processing jog 39 at position 8551"
[1] "Processing jog 40 at position 8776"
[1] "Processing jog 41 at position 9001"
[1] "Processing jog 42 at position 9226"
[1] "Processing jog 43 at position 9451"
[1] "Processing jog 44 at position 9676"
[1] "Processing jog 45 at position 9901"
[1] "Processing jog 46 at position 10126"
[1] "**************** missing data at  10126"
[1] "Processing jog 47 at position 10350"
[1] "Processing jog 48 at position 10575"
[1] "Processing jog 49 at position 10800"
[1] "Processing jog 50 at position 11025"
[1] "Processing jog 51 at position 11250"
[1] "Processing jog 52 at position 11475"
[1] "Processing jog 53 at position 11700"
[1] "Processing jog 54 at position 11925"
[1] "Processing jog 55 at position 12150"
[1] "Processing jog 56 at position 12375"
[1] "Processing jog 57 at position 12600"
[1] "Processing jog 58 at position 12825"
[1] "Processing jog 59 at position 13050"
[1] "Processing jog 60 at position 13275"
[1] "Processing jog 61 at position 13500"
[1] "Processing jog 62 at position 13725"
[1] "Processing jog 63 at position 13950"
[1] "Processing jog 64 at position 14175"
[1] "Processing jog 65 at position 14400"
[1] "Processing jog 66 at position 14625"
[1] "Processing jog 67 at position 14850"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -0.659  -545.715   120.052     0.941   374.892  -374.380     0.940   375.049 
          
 -374.420 
[1] "Screened jogs for high CO2 standard deviation:"
           [,1] [,2]         [,3]
[1,] 336.868889    9 0.0235395251
[2,] 336.895213   11 0.0200160979
[3,] 336.900464   10 0.0204979743
[4,] 337.101826    9 0.0208921123
[5,] 337.117712   12 0.0249683109
[6,] 337.128267   11 0.0213037714
[1] "Screened jogs for high O2 standard deviation:"
           [,1] [,2]        [,3]
[1,] 336.826629    2 17.35313642
[2,] 336.847726    5  5.78506189
[3,] 336.853066    6  4.46612775
[4,] 336.884661   12  4.58487875
[5,] 336.926982    5  4.64441180
[6,] 336.948151    1  5.82014166
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]   -0.659 -546.166  440.780    0.941  374.904 -372.758    0.940  375.061
[9] -372.884
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "plotting O2 flushing effect"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting o2 rollover"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"