Read 65692 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/080707a.mr"
[1] "Reading in data"
Read 16423 records
[1] "Approximately  73  jogs"
[1] "Fixing CO2 glitches"
Read 16423 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  CC129307"
[1] "Position  2    Cylinder  OK30053"
[1] "Position  3    Cylinder  CC129293"
[1] "Position  4    Cylinder  CC71581"
[1] "Position  5    Cylinder  CC129271"
[1] "Position  6    Cylinder  CC161540"
[1] "Position  7    Cylinder  OK30054"
[1] "Position  8    Cylinder  CC129295"
[1] "Position  9    Cylinder  OK30055"
[1] "Position  10    Cylinder  CC129281"
[1] "Position  11    Cylinder  CA01178"
[1] "Position  12    Cylinder  OK30057"
[1] "Position  13    Cylinder  NA"
Read 13 records
LIST_KNOWN: CC129307 CC129293 CC129271 CC161540 CC129295 CC129281 
LIST_UNKNOWN: OK30053 CC71581 OK30054 OK30055 CA01178 OK30057 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "Processing jog 3 at position 451"
[1] "Processing jog 4 at position 676"
[1] "Processing jog 5 at position 901"
[1] "Processing jog 6 at position 1126"
[1] "Processing jog 7 at position 1351"
[1] "Processing jog 8 at position 1576"
[1] "Processing jog 9 at position 1801"
[1] "Processing jog 10 at position 2026"
[1] "Processing jog 11 at position 2251"
[1] "Processing jog 12 at position 2476"
[1] "Processing jog 13 at position 2701"
[1] "Processing jog 14 at position 2926"
[1] "**************** missing data at  2926"
[1] "Processing jog 15 at position 3150"
[1] "Processing jog 16 at position 3375"
[1] "Processing jog 17 at position 3600"
[1] "Processing jog 18 at position 3825"
[1] "Processing jog 19 at position 4050"
[1] "Processing jog 20 at position 4275"
[1] "Processing jog 21 at position 4500"
[1] "Processing jog 22 at position 4725"
[1] "Processing jog 23 at position 4950"
[1] "Processing jog 24 at position 5175"
[1] "Processing jog 25 at position 5400"
[1] "Processing jog 26 at position 5625"
[1] "**************** missing data at  5625"
[1] "Processing jog 27 at position 5849"
[1] "Processing jog 28 at position 6074"
[1] "Processing jog 29 at position 6299"
[1] "Processing jog 30 at position 6524"
[1] "Processing jog 31 at position 6749"
[1] "Processing jog 32 at position 6974"
[1] "Processing jog 33 at position 7199"
[1] "Processing jog 34 at position 7424"
[1] "Processing jog 35 at position 7649"
[1] "Processing jog 36 at position 7874"
[1] "Processing jog 37 at position 8099"
[1] "Processing jog 38 at position 8324"
[1] "Processing jog 39 at position 8549"
[1] "Processing jog 40 at position 8774"
[1] "Processing jog 41 at position 8999"
[1] "Processing jog 42 at position 9224"
[1] "Processing jog 43 at position 9449"
[1] "Processing jog 44 at position 9674"
[1] "Processing jog 45 at position 9899"
[1] "Processing jog 46 at position 10124"
[1] "Processing jog 47 at position 10349"
[1] "Processing jog 48 at position 10574"
[1] "Processing jog 49 at position 10799"
[1] "Processing jog 50 at position 11024"
[1] "Processing jog 51 at position 11249"
[1] "Processing jog 52 at position 11474"
[1] "Processing jog 53 at position 11699"
[1] "Processing jog 54 at position 11924"
[1] "Processing jog 55 at position 12149"
[1] "Processing jog 56 at position 12374"
[1] "Processing jog 57 at position 12599"
[1] "Processing jog 58 at position 12824"
[1] "Processing jog 59 at position 13049"
[1] "Processing jog 60 at position 13274"
[1] "Processing jog 61 at position 13499"
[1] "Processing jog 62 at position 13724"
[1] "Processing jog 63 at position 13949"
[1] "Processing jog 64 at position 14174"
[1] "Processing jog 65 at position 14399"
[1] "Processing jog 66 at position 14624"
[1] "Processing jog 67 at position 14849"
[1] "Processing jog 68 at position 15074"
[1] "Processing jog 69 at position 15299"
[1] "Processing jog 70 at position 15524"
[1] "Processing jog 71 at position 15749"
[1] "Processing jog 72 at position 15974"
[1] "Processing jog 73 at position 16199"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -0.663  -566.221  -565.563     0.909   375.637  -373.907     0.909   375.765 
          
 -373.972 
[1] "Screened jogs for high O2 standard deviation:"
        [,1] [,2]       [,3]
X 189.759251    2 11.9463226
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]   -0.663 -566.387  285.669    0.910  375.638 -372.881    0.909  375.767
[9] -372.990
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "co2 stagnant effect zero adjustment fit did not converge for pos 1"
[1] "plotting O2 flushing effect"
[1] "o2 stagnant effect zero adjustment fit did not converge for pos 1"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting o2 rollover"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"