Read 44100 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/080325a.mr"
[1] "Reading in data"
Read 11025 records
[1] "Approximately  49  jogs"
[1] "Fixing CO2 glitches"
Read 11025 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  NA"
[1] "Position  2    Cylinder  CC129293"
[1] "Position  3    Cylinder  NA"
[1] "Position  4    Cylinder  NA"
[1] "Position  5    Cylinder  NA"
[1] "Position  6    Cylinder  CC161540"
[1] "Position  7    Cylinder  CC178269"
[1] "Position  8    Cylinder  CC129295"
[1] "Position  9    Cylinder  CC180655"
[1] "Position  10    Cylinder  CC129281"
[1] "Position  11    Cylinder  CC177811"
[1] "Position  12    Cylinder  CC129271"
[1] "Position  13    Cylinder  NA"
Read 13 records
LIST_KNOWN: CC129293 CC161540 CC129295 CC129281 CC129271 
LIST_UNKNOWN: CC178269 CC180655 CC177811 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "Processing jog 3 at position 451"
[1] "Processing jog 4 at position 676"
[1] "Processing jog 5 at position 901"
[1] "Processing jog 6 at position 1126"
[1] "Processing jog 7 at position 1351"
[1] "Processing jog 8 at position 1576"
[1] "Processing jog 9 at position 1801"
[1] "Processing jog 10 at position 2026"
[1] "Processing jog 11 at position 2251"
[1] "Processing jog 12 at position 2476"
[1] "Processing jog 13 at position 2701"
[1] "Processing jog 14 at position 2926"
[1] "Processing jog 15 at position 3151"
[1] "Processing jog 16 at position 3376"
[1] "Processing jog 17 at position 3601"
[1] "Processing jog 18 at position 3826"
[1] "Processing jog 19 at position 4051"
[1] "Processing jog 20 at position 4276"
[1] "Processing jog 21 at position 4501"
[1] "Processing jog 22 at position 4726"
[1] "Processing jog 23 at position 4951"
[1] "Processing jog 24 at position 5176"
[1] "Processing jog 25 at position 5401"
[1] "Processing jog 26 at position 5626"
[1] "Processing jog 27 at position 5851"
[1] "Processing jog 28 at position 6076"
[1] "Processing jog 29 at position 6301"
[1] "Processing jog 30 at position 6526"
[1] "Processing jog 31 at position 6751"
[1] "Processing jog 32 at position 6976"
[1] "Processing jog 33 at position 7201"
[1] "Processing jog 34 at position 7426"
[1] "Processing jog 35 at position 7651"
[1] "Processing jog 36 at position 7876"
[1] "Processing jog 37 at position 8101"
[1] "Processing jog 38 at position 8326"
[1] "Processing jog 39 at position 8551"
[1] "Processing jog 40 at position 8776"
[1] "Processing jog 41 at position 9001"
[1] "Processing jog 42 at position 9226"
[1] "Processing jog 43 at position 9451"
[1] "Processing jog 44 at position 9676"
[1] "Processing jog 45 at position 9901"
[1] "Processing jog 46 at position 10126"
[1] "Processing jog 47 at position 10351"
[1] "Processing jog 48 at position 10576"
[1] "Processing jog 49 at position 10801"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -0.683  -358.542  1263.439     0.920   379.984  -379.086     0.919   380.109 
          
 -379.144 
[1] "Screened jogs for high CO2 standard deviation:"
           [,1] [,2]         [,3]
[1,] 85.8522879    6 0.0305104684
[2,] 85.9333338    6 0.0208617659
[1] "Screened jogs for high O2 standard deviation:"
           [,1] [,2]        [,3]
[1,] 85.8522879    6 29.79016389
[2,] 85.8798695    9  4.05527428
[3,] 86.0765596   11  4.52155263
[4,] 86.1029993    6  5.57321275
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]   -0.685 -359.369  586.109    0.920  379.982 -377.983    0.919  380.107
[9] -378.090
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "co2 flushing effect zero adjustment fit did not converge for pos 10"
[1] "plotting O2 flushing effect"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting o2 rollover"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"