Read 75472 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/071119a.mr"
[1] "Reading in data"
Read 18868 records
[1] "Approximately  84  jogs"
[1] "Fixing CO2 glitches"
Read 18868 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  JJ8852"
[1] "Position  2    Cylinder  CA07280"
[1] "Position  3    Cylinder  JJ651"
[1] "Position  4    Cylinder  CA07288"
[1] "Position  5    Cylinder  JJ8906"
[1] "Position  6    Cylinder  CA07299"
[1] "Position  7    Cylinder  JJ20269"
[1] "Position  8    Cylinder  CA07260"
[1] "Position  9    Cylinder  JJ12502"
[1] "Position  10    Cylinder  JJ22398"
[1] "Position  11    Cylinder  CA07276"
[1] "Position  12    Cylinder  JJ8485"
[1] "Position  13    Cylinder  NA"
Read 13 records
LIST_KNOWN: CA07280 CA07288 CA07299 CA07260 CA07276 
LIST_UNKNOWN: JJ8852 JJ651 JJ8906 JJ20269 JJ12502 JJ22398 JJ8485 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Skipping initial  224  records."
[1] "Processing jog 1 at position 225"
[1] "Processing jog 2 at position 450"
[1] "Processing jog 3 at position 675"
[1] "Processing jog 4 at position 900"
[1] "Processing jog 5 at position 1125"
[1] "Processing jog 6 at position 1350"
[1] "Processing jog 7 at position 1575"
[1] "Processing jog 8 at position 1800"
[1] "Processing jog 9 at position 2025"
[1] "******** Skipping jog 9 at position 2025"
[1] "Processing jog 10 at position 2250"
[1] "**************** missing data at  2250"
[1] "Processing jog 11 at position 2444"
[1] "Processing jog 12 at position 2669"
[1] "Processing jog 13 at position 2894"
[1] "Processing jog 14 at position 3119"
[1] "Processing jog 15 at position 3344"
[1] "Processing jog 16 at position 3569"
[1] "Processing jog 17 at position 3794"
[1] "Processing jog 18 at position 4019"
[1] "Processing jog 19 at position 4244"
[1] "Processing jog 20 at position 4469"
[1] "Processing jog 21 at position 4694"
[1] "Processing jog 22 at position 4919"
[1] "Processing jog 23 at position 5144"
[1] "Processing jog 24 at position 5369"
[1] "Processing jog 25 at position 5594"
[1] "Processing jog 26 at position 5819"
[1] "Processing jog 27 at position 6044"
[1] "Processing jog 28 at position 6269"
[1] "Processing jog 29 at position 6494"
[1] "Processing jog 30 at position 6719"
[1] "Processing jog 31 at position 6944"
[1] "Processing jog 32 at position 7169"
[1] "Processing jog 33 at position 7394"
[1] "Processing jog 34 at position 7619"
[1] "Processing jog 35 at position 7844"
[1] "Processing jog 36 at position 8069"
[1] "Processing jog 37 at position 8294"
[1] "Processing jog 38 at position 8519"
[1] "Processing jog 39 at position 8744"
[1] "Processing jog 40 at position 8969"
[1] "Processing jog 41 at position 9194"
[1] "Processing jog 42 at position 9419"
[1] "Processing jog 43 at position 9644"
[1] "Processing jog 44 at position 9869"
[1] "Processing jog 45 at position 10094"
[1] "Processing jog 46 at position 10319"
[1] "Processing jog 47 at position 10544"
[1] "Processing jog 48 at position 10769"
[1] "Processing jog 49 at position 10994"
[1] "Processing jog 50 at position 11219"
[1] "Processing jog 51 at position 11444"
[1] "Processing jog 52 at position 11669"
[1] "Processing jog 53 at position 11894"
[1] "Processing jog 54 at position 12119"
[1] "Processing jog 55 at position 12344"
[1] "Processing jog 56 at position 12569"
[1] "Processing jog 57 at position 12794"
[1] "Processing jog 58 at position 13019"
[1] "Processing jog 59 at position 13244"
[1] "Processing jog 60 at position 13469"
[1] "Processing jog 61 at position 13694"
[1] "Processing jog 62 at position 13919"
[1] "Processing jog 63 at position 14144"
[1] "Processing jog 64 at position 14369"
[1] "Processing jog 65 at position 14594"
[1] "Processing jog 66 at position 14819"
[1] "Processing jog 67 at position 15044"
[1] "Processing jog 68 at position 15269"
[1] "Processing jog 69 at position 15494"
[1] "Processing jog 70 at position 15719"
[1] "Processing jog 71 at position 15944"
[1] "Processing jog 72 at position 16169"
[1] "Processing jog 73 at position 16394"
[1] "Processing jog 74 at position 16619"
[1] "Processing jog 75 at position 16844"
[1] "Processing jog 76 at position 17069"
[1] "Processing jog 77 at position 17294"
[1] "Processing jog 78 at position 17519"
[1] "Processing jog 79 at position 17744"
[1] "Processing jog 80 at position 17969"
[1] "Processing jog 81 at position 18194"
[1] "Processing jog 82 at position 18419"
[1] "Processing jog 83 at position 18644"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
                                 x2       x1                x2       x1 
   6.041    0.000    0.000    0.921  378.776 -378.154    0.921  378.895 
         
-378.224 
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]       6.041       0.000 -796501.594       0.921     378.775    -377.268
[7]       0.921     378.894    -377.376
[1] "plotting CO2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "plotting unknown co2"
[1] "plotting known co2"
[1] "plotting all variables"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting co2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"