Read 65700 records [1] "Analyzing /scr/raf/stephens/CFDAT/070920a.mr" [1] "Reading in data" Read 16425 records [1] "Approximately 73 jogs" [1] "Fixing CO2 glitches" Read 16425 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder OK30055" [1] "Position 2 Cylinder CC129293" [1] "Position 3 Cylinder CC129271" [1] "Position 4 Cylinder OK30053" [1] "Position 5 Cylinder CC129307" [1] "Position 6 Cylinder TC163554" [1] "Position 7 Cylinder OK30057" [1] "Position 8 Cylinder TC163216" [1] "Position 9 Cylinder CC129295" [1] "Position 10 Cylinder TC163546" [1] "Position 11 Cylinder CC129281" [1] "Position 12 Cylinder TC163548" [1] "Position 13 Cylinder NA" Read 13 records LIST_KNOWN: CC129293 CC129271 CC129307 CC129295 CC129281 LIST_UNKNOWN: OK30055 OK30053 TC163554 OK30057 TC163216 TC163546 TC163548 Read 173 records Read 54 records Read 536 records Read 2 items [1] "Processing jog 1 at position 1" [1] "Processing jog 2 at position 226" [1] "Processing jog 3 at position 451" [1] "Processing jog 4 at position 676" [1] "Processing jog 5 at position 901" [1] "Processing jog 6 at position 1126" [1] "Processing jog 7 at position 1351" [1] "Processing jog 8 at position 1576" [1] "Processing jog 9 at position 1801" [1] "Processing jog 10 at position 2026" [1] "Processing jog 11 at position 2251" [1] "Processing jog 12 at position 2476" [1] "Processing jog 13 at position 2701" [1] "Processing jog 14 at position 2926" [1] "Processing jog 15 at position 3151" [1] "Processing jog 16 at position 3376" [1] "Processing jog 17 at position 3601" [1] "Processing jog 18 at position 3826" [1] "Processing jog 19 at position 4051" [1] "Processing jog 20 at position 4276" [1] "Processing jog 21 at position 4501" [1] "Processing jog 22 at position 4726" [1] "Processing jog 23 at position 4951" [1] "Processing jog 24 at position 5176" [1] "Processing jog 25 at position 5401" [1] "Processing jog 26 at position 5626" [1] "Processing jog 27 at position 5851" [1] "Processing jog 28 at position 6076" [1] "Processing jog 29 at position 6301" [1] "Processing jog 30 at position 6526" [1] "Processing jog 31 at position 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "Processing jog 40 at position 8776" [1] "Processing jog 41 at position 9001" [1] "Processing jog 42 at position 9226" [1] "Processing jog 43 at position 9451" [1] "Processing jog 44 at position 9676" [1] "Processing jog 45 at position 9901" [1] "Processing jog 46 at position 10126" [1] "Processing jog 47 at position 10351" [1] "Processing jog 48 at position 10576" [1] "Processing jog 49 at position 10801" [1] "Processing jog 50 at position 11026" [1] "Processing jog 51 at position 11251" [1] "Processing jog 52 at position 11476" [1] "Processing jog 53 at position 11701" [1] "Processing jog 54 at position 11926" [1] "Processing jog 55 at position 12151" [1] "Processing jog 56 at position 12376" [1] "Processing jog 57 at position 12601" [1] "Processing jog 58 at position 12826" [1] "Processing jog 59 at position 13051" [1] "Processing jog 60 at position 13276" [1] "Processing jog 61 at position 13501" [1] "Processing jog 62 at position 13726" [1] "Processing jog 63 at position 13951" [1] "Processing jog 64 at position 14176" [1] "Processing jog 65 at position 14401" [1] "Processing jog 66 at position 14626" [1] "Processing jog 67 at position 14851" [1] "Processing jog 68 at position 15076" [1] "Processing jog 69 at position 15301" [1] "Processing jog 70 at position 15526" [1] "Processing jog 71 at position 15751" [1] "Processing jog 72 at position 15976" [1] "Processing jog 73 at position 16201" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 x2 x1 -1.163 -551.022 -327.118 0.925 386.205 -386.519 0.913 386.429 -386.241 [1] "Screened jogs for high CO2 standard deviation:" [,1] [,2] [,3] [1,] 263.713965 3 0.0217984313 [2,] 263.845011 4 0.0210214752 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 263.603903 6 21.81018231 [2,] 263.614392 8 17.00782483 [3,] 263.624881 10 20.71094394 [4,] 263.635369 12 18.88025261 [5,] 263.640578 12 18.85163308 [6,] 263.651066 10 20.74172364 [7,] 263.661555 8 16.86834478 [8,] 263.672044 6 21.84600001 [9,] 263.693023 2 12.46390329 [10,] 263.729701 6 21.71180812 [11,] 263.740189 8 16.70938791 [12,] 263.750679 10 20.62711487 [13,] 263.761168 12 18.64573402 [14,] 263.766376 12 18.71082838 [15,] 263.776865 10 21.05413678 [16,] 263.782111 9 8.56762876 [17,] 263.787356 8 17.09591166 [18,] 263.797845 6 21.99988414 [19,] 263.855500 6 21.68978041 [20,] 263.865989 8 16.71853910 [21,] 263.876477 10 20.76298824 [22,] 263.886967 12 18.67489895 [23,] 263.892175 12 18.79875195 [24,] 263.902665 10 20.95924665 [25,] 263.913157 8 16.86790406 [26,] 263.923646 6 21.89068867 [27,] 263.928890 5 11.71941815 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -1.160 -550.217 286.949 0.925 386.204 -385.336 0.913 386.427 [9] -385.421 [1] "plotting CO2 timeseries" [1] "plotting O2 timeseries" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting SP-WT slope correction" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html"