Read 65700 records [1] "Analyzing /scr/raf/stephens/CFDAT/070920a.mr" [1] "Reading in data" Read 16425 records [1] "Approximately 73 jogs" [1] "Fixing CO2 glitches" Read 16425 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder OK30055" [1] "Position 2 Cylinder CC129293" [1] "Position 3 Cylinder CC129271" [1] "Position 4 Cylinder OK30053" [1] "Position 5 Cylinder CC129307" [1] "Position 6 Cylinder TC163554" [1] "Position 7 Cylinder OK30057" [1] "Position 8 Cylinder TC163216" [1] "Position 9 Cylinder CC129295" [1] "Position 10 Cylinder TC163546" [1] "Position 11 Cylinder CC129281" [1] "Position 12 Cylinder TC163548" [1] "Position 13 Cylinder NA" Read 13 records LIST_KNOWN: CC129293 CC129271 CC129307 CC129295 CC129281 LIST_UNKNOWN: OK30055 OK30053 TC163554 OK30057 TC163216 TC163546 TC163548 Read 171 records Read 54 records Read 536 records Read 2 items [1] "Processing jog 1 at position 1" [1] "Processing jog 2 at position 226" [1] "Processing jog 3 at position 451" [1] "Processing jog 4 at position 676" [1] "Processing jog 5 at position 901" [1] "Processing jog 6 at position 1126" [1] "Processing jog 7 at position 1351" [1] "Processing jog 8 at position 1576" [1] "Processing jog 9 at position 1801" [1] "Processing jog 10 at position 2026" [1] "Processing jog 11 at position 2251" [1] "Processing jog 12 at position 2476" [1] "Processing jog 13 at position 2701" [1] "Processing jog 14 at position 2926" [1] "Processing jog 15 at position 3151" [1] "Processing jog 16 at position 3376" [1] "Processing jog 17 at position 3601" [1] "Processing jog 18 at position 3826" [1] "Processing jog 19 at position 4051" [1] "Processing jog 20 at position 4276" [1] "Processing jog 21 at position 4501" [1] "Processing jog 22 at position 4726" [1] "Processing jog 23 at position 4951" [1] "Processing jog 24 at position 5176" [1] "Processing jog 25 at position 5401" [1] "Processing jog 26 at position 5626" [1] "Processing jog 27 at position 5851" [1] "Processing jog 28 at position 6076" [1] "Processing jog 29 at position 6301" [1] "Processing jog 30 at position 6526" [1] "Processing jog 31 at position 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "Processing jog 40 at position 8776" [1] "Processing jog 41 at position 9001" [1] "Processing jog 42 at position 9226" [1] "Processing jog 43 at position 9451" [1] "Processing jog 44 at position 9676" [1] "Processing jog 45 at position 9901" [1] "Processing jog 46 at position 10126" [1] "Processing jog 47 at position 10351" [1] "Processing jog 48 at position 10576" [1] "Processing jog 49 at position 10801" [1] "Processing jog 50 at position 11026" [1] "Processing jog 51 at position 11251" [1] "Processing jog 52 at position 11476" [1] "Processing jog 53 at position 11701" [1] "Processing jog 54 at position 11926" [1] "Processing jog 55 at position 12151" [1] "Processing jog 56 at position 12376" [1] "Processing jog 57 at position 12601" [1] "Processing jog 58 at position 12826" [1] "Processing jog 59 at position 13051" [1] "Processing jog 60 at position 13276" [1] "Processing jog 61 at position 13501" [1] "Processing jog 62 at position 13726" [1] "Processing jog 63 at position 13951" [1] "Processing jog 64 at position 14176" [1] "Processing jog 65 at position 14401" [1] "Processing jog 66 at position 14626" [1] "Processing jog 67 at position 14851" [1] "Processing jog 68 at position 15076" [1] "Processing jog 69 at position 15301" [1] "Processing jog 70 at position 15526" [1] "Processing jog 71 at position 15751" [1] "Processing jog 72 at position 15976" [1] "Processing jog 73 at position 16201" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 x2 x1 -1.156 -546.844 -330.406 0.914 386.309 -386.170 0.913 386.429 -386.241 [1] "Screened jogs for high CO2 standard deviation:" [,1] [,2] [,3] [1,] 263.713965 3 0.0215377309 [2,] 263.845011 4 0.0207700669 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 263.603903 6 21.67321081 [2,] 263.614392 8 16.90101292 [3,] 263.624881 10 20.58087583 [4,] 263.635369 12 18.76168154 [5,] 263.640578 12 18.73324175 [6,] 263.651066 10 20.61146224 [7,] 263.661555 8 16.76240883 [8,] 263.672044 6 21.70880357 [9,] 263.693023 2 12.38562795 [10,] 263.729701 6 21.57545442 [11,] 263.740189 8 16.60445023 [12,] 263.750679 10 20.49757322 [13,] 263.761168 12 18.52863577 [14,] 263.766376 12 18.59332132 [15,] 263.776865 10 20.92191336 [16,] 263.782111 9 8.51382265 [17,] 263.787356 8 16.98854654 [18,] 263.797845 6 21.86172128 [19,] 263.855500 6 21.55356506 [20,] 263.865989 8 16.61354395 [21,] 263.876477 10 20.63259329 [22,] 263.886967 12 18.55761754 [23,] 263.892175 12 18.68069272 [24,] 263.902665 10 20.82761917 [25,] 263.913157 8 16.76197087 [26,] 263.923646 6 21.75321158 [27,] 263.928890 5 11.64581830 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -1.153 -546.044 283.664 0.914 386.307 -385.310 0.913 386.427 [9] -385.421 [1] "plotting CO2 timeseries" [1] "plotting O2 timeseries" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting SP-WT slope correction" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html"