Read 38700 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/070806a.mr"
[1] "Reading in data"
Read 9675 records
[1] "Approximately  43  jogs"
[1] "Fixing CO2 glitches"
Read 9675 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  NA"
[1] "Position  2    Cylinder  CC129293"
[1] "Position  3    Cylinder  CC129271"
[1] "Position  4    Cylinder  TC163548"
[1] "Position  5    Cylinder  CC129307"
[1] "Position  6    Cylinder  OK30054"
[1] "Position  7    Cylinder  CC79546"
[1] "Position  8    Cylinder  OK170199"
[1] "Position  9    Cylinder  CC129295"
[1] "Position  10    Cylinder  CC42671"
[1] "Position  11    Cylinder  CC129281"
[1] "Position  12    Cylinder  NA"
[1] "Position  13    Cylinder  NA"
Read 13 records
LIST_KNOWN: CC129293 CC129271 CC129307 CC129295 CC129281 
LIST_UNKNOWN: TC163548 OK30054 
Read 173 records
Read 54 records
Read 536 records
Read 2 items
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "Processing jog 3 at position 451"
[1] "Processing jog 4 at position 676"
[1] "Processing jog 5 at position 901"
[1] "Processing jog 6 at position 1126"
[1] "Processing jog 7 at position 1351"
[1] "Processing jog 8 at position 1576"
[1] "Processing jog 9 at position 1801"
[1] "Processing jog 10 at position 2026"
[1] "Processing jog 11 at position 2251"
[1] "Processing jog 12 at position 2476"
[1] "Processing jog 13 at position 2701"
[1] "Processing jog 14 at position 2926"
[1] "Processing jog 15 at position 3151"
[1] "Processing jog 16 at position 3376"
[1] "Processing jog 17 at position 3601"
[1] "Processing jog 18 at position 3826"
[1] "Processing jog 19 at position 4051"
[1] "Processing jog 20 at position 4276"
[1] "Processing jog 21 at position 4501"
[1] "Processing jog 22 at position 4726"
[1] "Processing jog 23 at position 4951"
[1] "Processing jog 24 at position 5176"
[1] "Processing jog 25 at position 5401"
[1] "Processing jog 26 at position 5626"
[1] "Processing jog 27 at position 5851"
[1] "Processing jog 28 at position 6076"
[1] "Processing jog 29 at position 6301"
[1] "Processing jog 30 at position 6526"
[1] "Processing jog 31 at position 6751"
[1] "Processing jog 32 at position 6976"
[1] "Processing jog 33 at position 7201"
[1] "Processing jog 34 at position 7426"
[1] "Processing jog 35 at position 7651"
[1] "Processing jog 36 at position 7876"
[1] "Processing jog 37 at position 8101"
[1] "Processing jog 38 at position 8326"
[1] "Processing jog 39 at position 8551"
[1] "Processing jog 40 at position 8776"
[1] "Processing jog 41 at position 9001"
[1] "Processing jog 42 at position 9226"
[1] "Processing jog 43 at position 9451"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -1.089  -543.341  -334.801     0.937   389.096  -389.731     0.924   389.280 
          
 -389.453 
[1] "Screened jogs for high CO2 standard deviation:"
           [,1] [,2]         [,3]
[1,] 218.448315    2 0.0208678112
[2,] 218.600297    3 0.0207434007
[1] "Screened jogs for high O2 standard deviation:"
            [,1] [,2]        [,3]
 [1,] 218.443070    3  7.78909512
 [2,] 218.453560    3  6.19177614
 [3,] 218.458813    4 18.91725230
 [4,] 218.464062    5  4.85280322
 [5,] 218.474556    9  5.11034641
 [6,] 218.495503    6  4.07936045
 [7,] 218.505993    4 18.69184443
 [8,] 218.526937    3  9.42742120
 [9,] 218.532181    4 18.78318559
[10,] 218.553162   11  4.16091530
[11,] 218.558374   11  4.76635590
[12,] 218.563621    9 11.61034568
[13,] 218.579355    4 18.71166928
[14,] 218.595053    2  5.02959771
[15,] 218.600297    3  8.03726459
[16,] 218.605544    4 19.02336978
[17,] 218.652712    4 18.43451928
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]   -1.110 -541.602  281.798    0.936  389.091 -388.557    0.923  389.276
[9] -388.630
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "co2 slope effect zero adjustment fit did not converge for pos 2"
[1] "plotting O2 flushing effect"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting o2 rollover"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"