Read 36900 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/070720a.mr"
[1] "Reading in data"
Read 9225 records
[1] "Approximately  41  jogs"
[1] "Fixing CO2 glitches"
Read 9225 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  NA"
[1] "Position  2    Cylinder  CC129293"
[1] "Position  3    Cylinder  CC129271"
[1] "Position  4    Cylinder  TC163546"
[1] "Position  5    Cylinder  CC129307"
[1] "Position  6    Cylinder  NA"
[1] "Position  7    Cylinder  CC79546"
[1] "Position  8    Cylinder  NA"
[1] "Position  9    Cylinder  CC129295"
[1] "Position  10    Cylinder  CC42671"
[1] "Position  11    Cylinder  CC129281"
[1] "Position  12    Cylinder  NA"
[1] "Position  13    Cylinder  FA02360"
Read 13 records
LIST_KNOWN: CC129293 CC129307 CC129295 CC129281 
LIST_UNKNOWN: TC163546 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "Processing jog 3 at position 451"
[1] "Processing jog 4 at position 676"
[1] "Processing jog 5 at position 901"
[1] "Processing jog 6 at position 1126"
[1] "Processing jog 7 at position 1351"
[1] "Processing jog 8 at position 1576"
[1] "Processing jog 9 at position 1801"
[1] "Processing jog 10 at position 2026"
[1] "Processing jog 11 at position 2251"
[1] "Processing jog 12 at position 2476"
[1] "Processing jog 13 at position 2701"
[1] "Processing jog 14 at position 2926"
[1] "Processing jog 15 at position 3151"
[1] "Processing jog 16 at position 3376"
[1] "Processing jog 17 at position 3601"
[1] "Processing jog 18 at position 3826"
[1] "Processing jog 19 at position 4051"
[1] "Processing jog 20 at position 4276"
[1] "Processing jog 21 at position 4501"
[1] "Processing jog 22 at position 4726"
[1] "Processing jog 23 at position 4951"
[1] "Processing jog 24 at position 5176"
[1] "Processing jog 25 at position 5401"
[1] "Processing jog 26 at position 5626"
[1] "Processing jog 27 at position 5851"
[1] "Processing jog 28 at position 6076"
[1] "Processing jog 29 at position 6301"
[1] "Processing jog 30 at position 6526"
[1] "Processing jog 31 at position 6751"
[1] "Processing jog 32 at position 6976"
[1] "Processing jog 33 at position 7201"
[1] "Processing jog 34 at position 7426"
[1] "Processing jog 35 at position 7651"
[1] "Processing jog 36 at position 7876"
[1] "Processing jog 37 at position 8101"
[1] "Processing jog 38 at position 8326"
[1] "Processing jog 39 at position 8551"
[1] "Processing jog 40 at position 8776"
[1] "Processing jog 41 at position 9001"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -1.378  -566.115   155.064     0.923   389.931  -389.110     0.922   390.042 
          
 -389.164 
[1] "Screened jogs for high CO2 standard deviation:"
           [,1] [,2]         [,3]
[1,] 201.481845    4 0.0245699719
[2,] 201.487089    2 0.0208128607
[3,] 201.586635    2 0.0225559199
[4,] 201.691382    2 0.0364223523
[1] "Screened jogs for high O2 standard deviation:"
            [,1] [,2]        [,3]
 [1,] 201.481845    4 25.82637975
 [2,] 201.492334    4 18.38660380
 [3,] 201.502822    9  4.29074860
 [4,] 201.529008    4 19.22987324
 [5,] 201.534264    2  5.11708035
 [6,] 201.539472    2  4.06466233
 [7,] 201.544716    4 18.73779675
 [8,] 201.565657   11  4.60334957
 [9,] 201.570902    9  4.15903728
[10,] 201.576146    5  4.57700624
[11,] 201.581390    4 19.18417343
[12,] 201.586635    2  4.14848660
[13,] 201.591843    2  5.07712672
[14,] 201.597087    4 18.71782377
[15,] 201.612820   11  4.72591351
[16,] 201.633763    4 19.03649717
[17,] 201.639007    2  4.19784940
[18,] 201.649460    4 18.42946215
[19,] 201.654705    5  4.04232779
[20,] 201.665194   11  4.00422603
[21,] 201.686136    4 19.10221066
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]   -1.391 -568.519  436.045    0.922  389.925 -388.269    0.922  390.036
[9] -388.362
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "plotting O2 flushing effect"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting o2 rollover"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"