Read 65696 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/070708a.mr"
[1] "Reading in data"
Read 16424 records
[1] "Approximately  73  jogs"
[1] "Fixing CO2 glitches"
Read 16424 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  TC163548"
[1] "Position  2    Cylinder  CC129293"
[1] "Position  3    Cylinder  CC161540"
[1] "Position  4    Cylinder  OK30057"
[1] "Position  5    Cylinder  CC129307"
[1] "Position  6    Cylinder  OK30053"
[1] "Position  7    Cylinder  CC79546"
[1] "Position  8    Cylinder  OK170199"
[1] "Position  9    Cylinder  CC129295"
[1] "Position  10    Cylinder  CC42671"
[1] "Position  11    Cylinder  CC129281"
[1] "Position  12    Cylinder  CC129271"
[1] "Position  13    Cylinder  FA02360"
Read 13 records
LIST_KNOWN: CC129293 CC129307 CC129295 CC129281 CC129271 
LIST_UNKNOWN: TC163548 OK30057 OK30053 OK170199 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "Processing jog 3 at position 451"
[1] "Processing jog 4 at position 676"
[1] "Processing jog 5 at position 901"
[1] "Processing jog 6 at position 1126"
[1] "Processing jog 7 at position 1351"
[1] "Processing jog 8 at position 1576"
[1] "Processing jog 9 at position 1801"
[1] "Processing jog 10 at position 2026"
[1] "Processing jog 11 at position 2251"
[1] "Processing jog 12 at position 2476"
[1] "Processing jog 13 at position 2701"
[1] "Processing jog 14 at position 2926"
[1] "Processing jog 15 at position 3151"
[1] "Processing jog 16 at position 3376"
[1] "Processing jog 17 at position 3601"
[1] "Processing jog 18 at position 3826"
[1] "Processing jog 19 at position 4051"
[1] "Processing jog 20 at position 4276"
[1] "**************** missing data at  4276"
[1] "Processing jog 21 at position 4500"
[1] "Processing jog 22 at position 4725"
[1] "Processing jog 23 at position 4950"
[1] "Processing jog 24 at position 5175"
[1] "Processing jog 25 at position 5400"
[1] "Processing jog 26 at position 5625"
[1] "Processing jog 27 at position 5850"
[1] "Processing jog 28 at position 6075"
[1] "Processing jog 29 at position 6300"
[1] "Processing jog 30 at position 6525"
[1] "Processing jog 31 at position 6750"
[1] "Processing jog 32 at position 6975"
[1] "Processing jog 33 at position 7200"
[1] "Processing jog 34 at position 7425"
[1] "Processing jog 35 at position 7650"
[1] "Processing jog 36 at position 7875"
[1] "Processing jog 37 at position 8100"
[1] "Processing jog 38 at position 8325"
[1] "Processing jog 39 at position 8550"
[1] "Processing jog 40 at position 8775"
[1] "Processing jog 41 at position 9000"
[1] "Processing jog 42 at position 9225"
[1] "Processing jog 43 at position 9450"
[1] "Processing jog 44 at position 9675"
[1] "Processing jog 45 at position 9900"
[1] "Processing jog 46 at position 10125"
[1] "Processing jog 47 at position 10350"
[1] "Processing jog 48 at position 10575"
[1] "Processing jog 49 at position 10800"
[1] "Processing jog 50 at position 11025"
[1] "Processing jog 51 at position 11250"
[1] "Processing jog 52 at position 11475"
[1] "Processing jog 53 at position 11700"
[1] "Processing jog 54 at position 11925"
[1] "Processing jog 55 at position 12150"
[1] "Processing jog 56 at position 12375"
[1] "Processing jog 57 at position 12600"
[1] "Processing jog 58 at position 12825"
[1] "Processing jog 59 at position 13050"
[1] "Processing jog 60 at position 13275"
[1] "Processing jog 61 at position 13500"
[1] "Processing jog 62 at position 13725"
[1] "Processing jog 63 at position 13950"
[1] "Processing jog 64 at position 14175"
[1] "Processing jog 65 at position 14400"
[1] "Processing jog 66 at position 14625"
[1] "Processing jog 67 at position 14850"
[1] "Processing jog 68 at position 15075"
[1] "Processing jog 69 at position 15300"
[1] "Processing jog 70 at position 15525"
[1] "Processing jog 71 at position 15750"
[1] "Processing jog 72 at position 15975"
[1] "Processing jog 73 at position 16200"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -1.088  -529.591  -280.472     0.922   389.725  -389.949     0.921   389.842 
          
 -390.020 
[1] "Screened jogs for high CO2 standard deviation:"
           [,1] [,2]         [,3]
[1,] 189.863958    2 0.0225136420
[2,] 189.958319    2 0.0200872932
[3,] 189.984550    9 0.0214820945
[1] "Screened jogs for high O2 standard deviation:"
            [,1] [,2]        [,3]
 [1,] 189.670057    1 19.15335211
 [2,] 189.759178    1 18.94740377
 [3,] 189.806341   12  6.81948295
 [4,] 189.853506    1 18.99727493
 [5,] 189.858714    1 19.22093483
 [6,] 189.921644    8 11.45714623
 [7,] 189.947867    1 18.83347347
 [8,] 189.953075    1 19.20983892
 [9,] 190.000249   12  7.12148408
[10,] 190.042394    1 19.00114261
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]   -1.086 -529.107  292.075    0.922  389.724 -389.111    0.921  389.841
[9] -389.221
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "plotting O2 flushing effect"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting o2 rollover"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"