Read 72900 records [1] "Analyzing /scr/raf/stephens/CFDAT/070516a.mr" [1] "Reading in data" Read 18225 records [1] "Approximately 81 jogs" [1] "Fixing CO2 glitches" Read 18225 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder CA07556" [1] "Position 2 Cylinder CC129293" [1] "Position 3 Cylinder CC161540" [1] "Position 4 Cylinder CA07560" [1] "Position 5 Cylinder CC129307" [1] "Position 6 Cylinder CA07299" [1] "Position 7 Cylinder CA07671" [1] "Position 8 Cylinder CA07554" [1] "Position 9 Cylinder CC129295" [1] "Position 10 Cylinder CC42671" [1] "Position 11 Cylinder CC129281" [1] "Position 12 Cylinder CC129271" [1] "Position 13 Cylinder FA02360" Read 13 records LIST_KNOWN: CC129293 CC161540 CC129307 CC129295 CC129281 CC129271 LIST_UNKNOWN: CA07556 CA07560 CA07671 CA07554 Read 171 records Read 54 records Read 536 records Read 2 items [1] "Processing jog 1 at position 1" [1] "Processing jog 2 at position 226" [1] "Processing jog 3 at position 451" [1] "Processing jog 4 at position 676" [1] "Processing jog 5 at position 901" [1] "Processing jog 6 at position 1126" [1] "Processing jog 7 at position 1351" [1] "Processing jog 8 at position 1576" [1] "Processing jog 9 at position 1801" [1] "Processing jog 10 at position 2026" [1] "Processing jog 11 at position 2251" [1] "Processing jog 12 at position 2476" [1] "Processing jog 13 at position 2701" [1] "Processing jog 14 at position 2926" [1] "Processing jog 15 at position 3151" [1] "Processing jog 16 at position 3376" [1] "Processing jog 17 at position 3601" [1] "Processing jog 18 at position 3826" [1] "Processing jog 19 at position 4051" [1] "Processing jog 20 at position 4276" [1] "Processing jog 21 at position 4501" [1] "Processing jog 22 at position 4726" [1] "Processing jog 23 at position 4951" [1] "Processing jog 24 at position 5176" [1] "Processing jog 25 at position 5401" [1] "Processing jog 26 at position 5626" [1] "Processing jog 27 at position 5851" [1] "Processing jog 28 at position 6076" [1] "Processing jog 29 at position 6301" [1] "Processing jog 30 at position 6526" [1] "Processing jog 31 at position 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "Processing jog 40 at position 8776" [1] "Processing jog 41 at position 9001" [1] "Processing jog 42 at position 9226" [1] "Processing jog 43 at position 9451" [1] "Processing jog 44 at position 9676" [1] "Processing jog 45 at position 9901" [1] "Processing jog 46 at position 10126" [1] "Processing jog 47 at position 10351" [1] "Processing jog 48 at position 10576" [1] "Processing jog 49 at position 10801" [1] "Processing jog 50 at position 11026" [1] "Processing jog 51 at position 11251" [1] "Processing jog 52 at position 11476" [1] "Processing jog 53 at position 11701" [1] "Processing jog 54 at position 11926" [1] "Processing jog 55 at position 12151" [1] "Processing jog 56 at position 12376" [1] "Processing jog 57 at position 12601" [1] "Processing jog 58 at position 12826" [1] "Processing jog 59 at position 13051" [1] "Processing jog 60 at position 13276" [1] "Processing jog 61 at position 13501" [1] "Processing jog 62 at position 13726" [1] "Processing jog 63 at position 13951" [1] "Processing jog 64 at position 14176" [1] "Processing jog 65 at position 14401" [1] "Processing jog 66 at position 14626" [1] "Processing jog 67 at position 14851" [1] "Processing jog 68 at position 15076" [1] "Processing jog 69 at position 15301" [1] "Processing jog 70 at position 15526" [1] "Processing jog 71 at position 15751" [1] "Processing jog 72 at position 15976" [1] "Processing jog 73 at position 16201" [1] "Processing jog 74 at position 16426" [1] "Processing jog 75 at position 16651" [1] "Processing jog 76 at position 16876" [1] "Processing jog 77 at position 17101" [1] "Processing jog 78 at position 17326" [1] "Processing jog 79 at position 17551" [1] "Processing jog 80 at position 17776" [1] "Processing jog 81 at position 18001" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 x2 x1 -0.742 -417.698 752.490 0.925 392.620 -392.580 0.924 392.734 -392.645 [1] "Screened jogs for high CO2 standard deviation:" [,1] [,2] [,3] x2 137.010956 1 0.0341197502 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 136.717170 5 106.3841411 [2,] 136.722415 7 29.3347105 [3,] 136.727662 8 209.6431284 [4,] 136.732907 9 309.7273976 [5,] 136.738152 11 294.9503203 [6,] 136.743396 12 539.9275037 [7,] 136.748605 12 111.8754556 [8,] 136.753850 11 259.5071000 [9,] 136.759095 9 420.9539504 [10,] 136.764340 8 143.6659915 [11,] 136.774828 5 73.4581292 [12,] 136.780074 4 254.1380145 [13,] 136.790563 2 92.5649232 [14,] 136.822275 5 251.8275473 [15,] 136.827521 7 102.9921618 [16,] 136.832765 8 246.9718792 [17,] 136.853708 12 161.0931822 [18,] 136.879936 5 25.2286753 [19,] 136.937593 8 24.7829984 [20,] 136.948084 11 25.0516139 [21,] 136.958544 12 23.7567169 [22,] 136.990013 4 52.1823319 [23,] 137.031935 5 23.1109229 [24,] 137.047674 9 204.8948208 [25,] 137.052920 11 78.8043096 [26,] 137.058165 12 117.4400517 [27,] 137.063374 12 58.3401526 [28,] 137.068620 11 51.6456037 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.737 -422.801 508.516 0.925 392.620 -391.730 0.924 392.734 [9] -391.832 [1] "plotting CO2 timeseries" [1] "plotting O2 timeseries" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting SP-WT slope correction" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html"