Read 58496 records [1] "Analyzing /scr/raf/stephens/CFDAT/070508a.mr" [1] "Reading in data" Read 14624 records [1] "Approximately 65 jogs" [1] "Fixing CO2 glitches" Read 14624 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder NA" [1] "Position 2 Cylinder CA07280" [1] "Position 3 Cylinder CC161540" [1] "Position 4 Cylinder CA07288" [1] "Position 5 Cylinder TC163554" [1] "Position 6 Cylinder CA07299" [1] "Position 7 Cylinder TC163548" [1] "Position 8 Cylinder CA07260" [1] "Position 9 Cylinder TC163546" [1] "Position 10 Cylinder CC42671" [1] "Position 11 Cylinder CA07276" [1] "Position 12 Cylinder CC129271" [1] "Position 13 Cylinder FA02360" Read 13 records LIST_KNOWN: CA07280 CA07288 CA07299 CA07260 CA07276 LIST_UNKNOWN: TC163554 TC163548 TC163546 Read 171 records Read 54 records Read 536 records Read 2 items [1] "Skipping initial 224 records." [1] "Processing jog 1 at position 225" [1] "Processing jog 2 at position 450" [1] "Processing jog 3 at position 675" [1] "Processing jog 4 at position 900" [1] "Processing jog 5 at position 1125" [1] "Processing jog 6 at position 1350" [1] "Processing jog 7 at position 1575" [1] "Processing jog 8 at position 1800" [1] "Processing jog 9 at position 2025" [1] "Processing jog 10 at position 2250" [1] "Processing jog 11 at position 2475" [1] "Processing jog 12 at position 2700" [1] "Processing jog 13 at position 2925" [1] "Processing jog 14 at position 3150" [1] "Processing jog 15 at position 3375" [1] "Processing jog 16 at position 3600" [1] "Processing jog 17 at position 3825" [1] "Processing jog 18 at position 4050" [1] "Processing jog 19 at position 4275" [1] "Processing jog 20 at position 4500" [1] "Processing jog 21 at position 4725" [1] "Processing jog 22 at position 4950" [1] "Processing jog 23 at position 5175" [1] "Processing jog 24 at position 5400" [1] "Processing jog 25 at position 5625" [1] "Processing jog 26 at position 5850" [1] "Processing jog 27 at position 6075" [1] "Processing jog 28 at position 6300" [1] "Processing jog 29 at position 6525" [1] "Processing jog 30 at position 6750" [1] "Processing jog 31 at position 6975" [1] "Processing jog 32 at position 7200" [1] "Processing jog 33 at position 7425" [1] "Processing jog 34 at position 7650" [1] "Processing jog 35 at position 7875" [1] "Processing jog 36 at position 8100" [1] "Processing jog 37 at position 8325" [1] "Processing jog 38 at position 8550" [1] "Processing jog 39 at position 8775" [1] "Processing jog 40 at position 9000" [1] "Processing jog 41 at position 9225" [1] "Processing jog 42 at position 9450" [1] "Processing jog 43 at position 9675" [1] "Processing jog 44 at position 9900" [1] "Processing jog 45 at position 10125" [1] "Processing jog 46 at position 10350" [1] "Processing jog 47 at position 10575" [1] "Processing jog 48 at position 10800" [1] "Processing jog 49 at position 11025" [1] "Processing jog 50 at position 11250" [1] "Processing jog 51 at position 11475" [1] "Processing jog 52 at position 11700" [1] "Processing jog 53 at position 11925" [1] "Processing jog 54 at position 12150" [1] "Processing jog 55 at position 12375" [1] "Processing jog 56 at position 12600" [1] "Processing jog 57 at position 12825" [1] "Processing jog 58 at position 13050" [1] "Processing jog 59 at position 13275" [1] "Processing jog 60 at position 13500" [1] "Processing jog 61 at position 13725" [1] "Processing jog 62 at position 13950" [1] "Processing jog 63 at position 14175" [1] "Processing jog 64 at position 14400" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 x2 x1 -0.727 -520.527 969.141 0.927 392.663 -393.261 0.927 392.771 -393.331 [1] "Screened jogs for high CO2 standard deviation:" [,1] [,2] [,3] [1,] 128.775371 2 0.0227102094 [2,] 128.780580 2 0.0223234037 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 128.701975 4 76.93222515 [2,] 128.707221 5 77.85342299 [3,] 128.712466 6 24.41983852 [4,] 128.717713 7 25.63614653 [5,] 128.722957 8 31.82844056 [6,] 128.728202 9 38.96819840 [7,] 128.733446 11 62.35439930 [8,] 128.738655 11 10.04725051 [9,] 128.743900 9 75.98377876 [10,] 128.749144 8 61.76054982 [11,] 128.754392 7 24.91389173 [12,] 128.764883 5 85.66282287 [13,] 128.770127 4 5.95558533 [14,] 128.780580 2 12.34904622 [15,] 128.785825 4 8.24805022 [16,] 128.791069 5 29.46760810 [17,] 128.796314 6 18.22172216 [18,] 128.801563 7 25.10918128 [19,] 128.812051 9 32.00681351 [20,] 128.822504 11 16.46837209 [21,] 128.827748 9 36.47370164 [22,] 128.832993 8 65.21041027 [23,] 128.838239 7 32.54580337 [24,] 128.843483 6 89.38738092 [25,] 128.848728 5 29.26176551 [26,] 128.864425 2 9.83171988 [27,] 128.874913 5 29.81518915 [28,] 128.880157 6 6.22184485 [29,] 128.885403 7 25.31440293 [30,] 128.890648 8 199.16528839 [31,] 128.895893 9 159.82318697 [32,] 128.901137 11 151.93397096 [33,] 128.906345 11 15.94519785 [34,] 128.911590 9 222.92975405 [35,] 128.916834 8 78.87677526 [36,] 128.922079 7 293.40222714 [37,] 128.927327 6 19.51674237 [38,] 128.932574 5 149.34907774 [39,] 128.937818 4 11.11738743 [40,] 128.943062 2 69.68831849 [41,] 128.948271 2 74.28306519 [42,] 128.953515 4 173.88250368 [43,] 128.958759 5 41.87081009 [44,] 128.964004 6 43.02176022 [45,] 128.969250 7 26.33368272 [46,] 128.974494 8 21.94825223 [47,] 128.979739 9 28.19326023 [48,] 128.995437 9 27.93238211 [49,] 129.000681 8 5.94980729 [50,] 129.005929 7 27.55553112 [51,] 129.011173 6 10.94195167 [52,] 129.016419 5 39.08125495 [53,] 129.021663 4 6.28007956 [54,] 129.026907 2 19.92230374 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.727 -520.377 634.836 0.927 392.662 -392.367 0.927 392.771 [9] -392.472 [1] "plotting CO2 timeseries" [1] "plotting O2 timeseries" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting SP-WT slope correction" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html"