Read 49500 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/070412a.mr"
[1] "Reading in data"
Read 12375 records
[1] "Approximately  55  jogs"
[1] "Fixing CO2 glitches"
Read 12375 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  TC163554"
[1] "Position  2    Cylinder  CA07280"
[1] "Position  3    Cylinder  TC163548"
[1] "Position  4    Cylinder  CA07288"
[1] "Position  5    Cylinder  TC163546"
[1] "Position  6    Cylinder  CA07299"
[1] "Position  7    Cylinder  TC163218"
[1] "Position  8    Cylinder  CA07260"
[1] "Position  9    Cylinder  NA"
[1] "Position  10    Cylinder  NA"
[1] "Position  11    Cylinder  CA07276"
[1] "Position  12    Cylinder  NA"
[1] "Position  13    Cylinder  FA02360"
Read 13 records
LIST_KNOWN: CA07280 CA07288 CA07299 CA07260 CA07276 
LIST_UNKNOWN: TC163554 TC163548 TC163546 TC163218 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "Processing jog 3 at position 451"
[1] "Processing jog 4 at position 676"
[1] "Processing jog 5 at position 901"
[1] "Processing jog 6 at position 1126"
[1] "Processing jog 7 at position 1351"
[1] "Processing jog 8 at position 1576"
[1] "Processing jog 9 at position 1801"
[1] "Processing jog 10 at position 2026"
[1] "Processing jog 11 at position 2251"
[1] "Processing jog 12 at position 2476"
[1] "Processing jog 13 at position 2701"
[1] "Processing jog 14 at position 2926"
[1] "Processing jog 15 at position 3151"
[1] "Processing jog 16 at position 3376"
[1] "Processing jog 17 at position 3601"
[1] "Processing jog 18 at position 3826"
[1] "Processing jog 19 at position 4051"
[1] "Processing jog 20 at position 4276"
[1] "Processing jog 21 at position 4501"
[1] "Processing jog 22 at position 4726"
[1] "Processing jog 23 at position 4951"
[1] "Processing jog 24 at position 5176"
[1] "Processing jog 25 at position 5401"
[1] "Processing jog 26 at position 5626"
[1] "Processing jog 27 at position 5851"
[1] "Processing jog 28 at position 6076"
[1] "Processing jog 29 at position 6301"
[1] "Processing jog 30 at position 6526"
[1] "Processing jog 31 at position 6751"
[1] "Processing jog 32 at position 6976"
[1] "Processing jog 33 at position 7201"
[1] "Processing jog 34 at position 7426"
[1] "Processing jog 35 at position 7651"
[1] "Processing jog 36 at position 7876"
[1] "Processing jog 37 at position 8101"
[1] "Processing jog 38 at position 8326"
[1] "Processing jog 39 at position 8551"
[1] "Processing jog 40 at position 8776"
[1] "Processing jog 41 at position 9001"
[1] "Processing jog 42 at position 9226"
[1] "Processing jog 43 at position 9451"
[1] "Processing jog 44 at position 9676"
[1] "Processing jog 45 at position 9901"
[1] "Processing jog 46 at position 10126"
[1] "Processing jog 47 at position 10351"
[1] "Processing jog 48 at position 10576"
[1] "Processing jog 49 at position 10801"
[1] "Processing jog 50 at position 11026"
[1] "Processing jog 51 at position 11251"
[1] "Processing jog 52 at position 11476"
[1] "Processing jog 53 at position 11701"
[1] "Processing jog 54 at position 11926"
[1] "Processing jog 55 at position 12151"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -0.679  -512.158  1072.187     0.900   380.095  -379.180     0.899   380.214 
          
 -379.250 
[1] "Screened jogs for high O2 standard deviation:"
            [,1] [,2]       [,3]
 [1,] 102.701798    2 26.9569730
 [2,] 102.707042    1 39.0945617
 [3,] 102.712287    2 15.5194542
 [4,] 102.717531    3 32.1853993
 [5,] 102.722775    4 40.8241420
 [6,] 102.728019    5 34.2199663
 [7,] 102.738507    7 23.3427686
 [8,] 102.743752    8 21.0530625
 [9,] 102.748996   11 39.3798954
[10,] 102.754204   11 36.2493419
[11,] 102.764968    7 35.8658887
[12,] 102.775459    5 40.0564931
[13,] 102.786082    3 25.8246957
[14,] 102.796662    1 30.6091849
[15,] 102.801870    1 30.7920928
[16,] 102.812362    3 26.9097210
[17,] 102.822898    5 34.5167923
[18,] 102.828226    6 45.0712200
[19,] 102.833550    7 49.8956808
[20,] 102.844207   11 62.5477587
[21,] 102.854789    8 32.2454001
[22,] 102.860036    7 23.1842040
[23,] 102.865293    6 26.4883415
[24,] 102.870538    5 49.2370740
[25,] 102.881046    3 43.7988466
[26,] 102.891542    1 49.5001257
[27,] 102.896750    1 45.9632450
[28,] 102.907320    3 26.3363425
[29,] 102.912650    4 27.5344120
[30,] 102.917981    5 29.4343721
[31,] 102.923313    6 34.3113369
[32,] 102.928643    7 23.5213395
[33,] 102.944598   11 33.4381852
[34,] 102.955263    7 26.5286688
[35,] 102.965927    5 28.8433708
[36,] 102.976590    3 25.8005381
[37,] 102.981921    2 23.6054307
[38,] 102.987183    1 30.5880506
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]   -0.684 -511.011  651.374    0.900  380.094 -378.280    0.899  380.213
[9] -378.388
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "plotting O2 flushing effect"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting o2 rollover"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"