Read 65700 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/070305a.mr"
[1] "Reading in data"
Read 16425 records
[1] "Approximately  73  jogs"
[1] "Fixing CO2 glitches"
Read 16425 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  CC161540"
[1] "Position  2    Cylinder  CC129293"
[1] "Position  3    Cylinder  ND19529"
[1] "Position  4    Cylinder  CC129307"
[1] "Position  5    Cylinder  ND19273"
[1] "Position  6    Cylinder  ND19517"
[1] "Position  7    Cylinder  CC129281"
[1] "Position  8    Cylinder  CC129295"
[1] "Position  9    Cylinder  ND19681"
[1] "Position  10    Cylinder  ND20050"
[1] "Position  11    Cylinder  ND20887"
[1] "Position  12    Cylinder  CC129271"
[1] "Position  13    Cylinder  NA"
Read 13 records
LIST_KNOWN: ND19529 ND19273 ND19517 ND19681 ND20050 ND20887 
LIST_UNKNOWN: CC161540 CC129293 CC129307 CC129281 CC129295 CC129271 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "Processing jog 3 at position 451"
[1] "Processing jog 4 at position 676"
[1] "Processing jog 5 at position 901"
[1] "Processing jog 6 at position 1126"
[1] "Processing jog 7 at position 1351"
[1] "Processing jog 8 at position 1576"
[1] "Processing jog 9 at position 1801"
[1] "Processing jog 10 at position 2026"
[1] "Processing jog 11 at position 2251"
[1] "Processing jog 12 at position 2476"
[1] "Processing jog 13 at position 2701"
[1] "Processing jog 14 at position 2926"
[1] "Processing jog 15 at position 3151"
[1] "Processing jog 16 at position 3376"
[1] "Processing jog 17 at position 3601"
[1] "Processing jog 18 at position 3826"
[1] "Processing jog 19 at position 4051"
[1] "Processing jog 20 at position 4276"
[1] "Processing jog 21 at position 4501"
[1] "Processing jog 22 at position 4726"
[1] "Processing jog 23 at position 4951"
[1] "Processing jog 24 at position 5176"
[1] "Processing jog 25 at position 5401"
[1] "Processing jog 26 at position 5626"
[1] "Processing jog 27 at position 5851"
[1] "Processing jog 28 at position 6076"
[1] "Processing jog 29 at position 6301"
[1] "Processing jog 30 at position 6526"
[1] "Processing jog 31 at position 6751"
[1] "Processing jog 32 at position 6976"
[1] "Processing jog 33 at position 7201"
[1] "Processing jog 34 at position 7426"
[1] "Processing jog 35 at position 7651"
[1] "Processing jog 36 at position 7876"
[1] "Processing jog 37 at position 8101"
[1] "Processing jog 38 at position 8326"
[1] "Processing jog 39 at position 8551"
[1] "Processing jog 40 at position 8776"
[1] "Processing jog 41 at position 9001"
[1] "Processing jog 42 at position 9226"
[1] "Processing jog 43 at position 9451"
[1] "Processing jog 44 at position 9676"
[1] "Processing jog 45 at position 9901"
[1] "Processing jog 46 at position 10126"
[1] "Processing jog 47 at position 10351"
[1] "Processing jog 48 at position 10576"
[1] "Processing jog 49 at position 10801"
[1] "Processing jog 50 at position 11026"
[1] "Processing jog 51 at position 11251"
[1] "Processing jog 52 at position 11476"
[1] "Processing jog 53 at position 11701"
[1] "Processing jog 54 at position 11926"
[1] "Processing jog 55 at position 12151"
[1] "Processing jog 56 at position 12376"
[1] "Processing jog 57 at position 12601"
[1] "Processing jog 58 at position 12826"
[1] "Processing jog 59 at position 13051"
[1] "Processing jog 60 at position 13276"
[1] "Processing jog 61 at position 13501"
[1] "Processing jog 62 at position 13726"
[1] "Processing jog 63 at position 13951"
[1] "Processing jog 64 at position 14176"
[1] "Processing jog 65 at position 14401"
[1] "Processing jog 66 at position 14626"
[1] "Processing jog 67 at position 14851"
[1] "Processing jog 68 at position 15076"
[1] "Processing jog 69 at position 15301"
[1] "Processing jog 70 at position 15526"
[1] "Processing jog 71 at position 15751"
[1] "Processing jog 72 at position 15976"
[1] "Processing jog 73 at position 16201"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -0.740  -466.902   805.538     0.903   380.284  -378.655     0.902   380.436 
          
 -378.695 
[1] "Screened jogs for high CO2 standard deviation:"
           [,1] [,2]         [,3]
[1,] 64.4797832   10 0.0207655662
[2,] 64.7263751   11 0.0201257750
[1] "Screened jogs for high O2 standard deviation:"
           [,1] [,2]       [,3]
[1,] 64.4011014    2 6.36918346
[2,] 64.4273252    5 4.12775612
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]   -0.740 -466.687  553.585    0.903  380.281 -377.157    0.902  380.432
[9] -377.276
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "plotting O2 flushing effect"
[1] "o2 flushing effect zero adjustment fit did not converge for pos 5"
[1] "o2 stagnant effect zero adjustment fit did not converge for pos 5"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting o2 rollover"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"