Read 65700 records [1] "Analyzing /scr/raf/stephens/CFDAT/060622a.mr" [1] "Reading in data" Read 16425 records [1] "Approximately 73 jogs" [1] "Fixing CO2 glitches" Read 16425 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder JJ27141" [1] "Position 2 Cylinder CC129271" [1] "Position 3 Cylinder JA02094" [1] "Position 4 Cylinder JJ23418" [1] "Position 5 Cylinder CC129281" [1] "Position 6 Cylinder JJ8428" [1] "Position 7 Cylinder CC129295" [1] "Position 8 Cylinder JA01781" [1] "Position 9 Cylinder JJ8937" [1] "Position 10 Cylinder CC129307" [1] "Position 11 Cylinder JJ3611" [1] "Position 12 Cylinder CC161540" [1] "Position 13 Cylinder NA" Read 13 records LIST_KNOWN: CC129271 CC129281 CC129295 CC129307 LIST_UNKNOWN: JJ27141 JA02094 JJ23418 JJ8428 JA01781 JJ8937 JJ3611 Read 171 records Read 54 records Read 536 records Read 2 items [1] "Processing jog 1 at position 1" [1] "Processing jog 2 at position 226" [1] "Processing jog 3 at position 451" [1] "Processing jog 4 at position 676" [1] "Processing jog 5 at position 901" [1] "Processing jog 6 at position 1126" [1] "Processing jog 7 at position 1351" [1] "Processing jog 8 at position 1576" [1] "Processing jog 9 at position 1801" [1] "Processing jog 10 at position 2026" [1] "Processing jog 11 at position 2251" [1] "Processing jog 12 at position 2476" [1] "Processing jog 13 at position 2701" [1] "Processing jog 14 at position 2926" [1] "Processing jog 15 at position 3151" [1] "Processing jog 16 at position 3376" [1] "Processing jog 17 at position 3601" [1] "Processing jog 18 at position 3826" [1] "Processing jog 19 at position 4051" [1] "Processing jog 20 at position 4276" [1] "Processing jog 21 at position 4501" [1] "Processing jog 22 at position 4726" [1] "Processing jog 23 at position 4951" [1] "Processing jog 24 at position 5176" [1] "Processing jog 25 at position 5401" [1] "Processing jog 26 at position 5626" [1] "Processing jog 27 at position 5851" [1] "Processing jog 28 at position 6076" [1] "Processing jog 29 at position 6301" [1] "Processing jog 30 at position 6526" [1] "Processing jog 31 at position 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "Processing jog 40 at position 8776" [1] "Processing jog 41 at position 9001" [1] "Processing jog 42 at position 9226" [1] "Processing jog 43 at position 9451" [1] "Processing jog 44 at position 9676" [1] "Processing jog 45 at position 9901" [1] "Processing jog 46 at position 10126" [1] "Processing jog 47 at position 10351" [1] "Processing jog 48 at position 10576" [1] "Processing jog 49 at position 10801" [1] "Processing jog 50 at position 11026" [1] "Processing jog 51 at position 11251" [1] "Processing jog 52 at position 11476" [1] "Processing jog 53 at position 11701" [1] "Processing jog 54 at position 11926" [1] "Processing jog 55 at position 12151" [1] "Processing jog 56 at position 12376" [1] "Processing jog 57 at position 12601" [1] "Processing jog 58 at position 12826" [1] "Processing jog 59 at position 13051" [1] "Processing jog 60 at position 13276" [1] "Processing jog 61 at position 13501" [1] "Processing jog 62 at position 13726" [1] "Processing jog 63 at position 13951" [1] "Processing jog 64 at position 14176" [1] "Processing jog 65 at position 14401" [1] "Processing jog 66 at position 14626" [1] "Processing jog 67 at position 14851" [1] "Processing jog 68 at position 15076" [1] "Processing jog 69 at position 15301" [1] "Processing jog 70 at position 15526" [1] "Processing jog 71 at position 15751" [1] "Processing jog 72 at position 15976" [1] "Processing jog 73 at position 16201" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 x2 x1 -0.675 -197.629 986.115 0.878 365.956 -364.737 0.877 366.097 -364.861 [1] "Screened jogs for high CO2 standard deviation:" [,1] [,2] [,3] [1,] 173.766445 4 0.0247395908 [2,] 173.808416 12 0.0512090222 [3,] 173.813627 12 0.0483781032 [4,] 173.876722 1 0.0207314169 [5,] 173.934825 12 0.0435179862 [6,] 173.940095 12 0.0288530624 [7,] 174.061281 12 0.0267040183 [8,] 174.066490 12 0.0239778205 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 173.745456 2 20.33912072 [2,] 173.750701 1 4.12316521 [3,] 173.761199 3 5.00329090 [4,] 173.787429 8 5.85054832 [5,] 173.792675 9 5.84314623 [6,] 173.803170 11 294.02473692 [7,] 173.808416 12 81.30899300 [8,] 173.813627 12 593.64536289 [9,] 173.818872 11 6.05351837 [10,] 173.829365 9 5.50653196 [11,] 173.834609 8 5.99945243 [12,] 173.860997 3 5.16009749 [13,] 173.871514 1 4.39677347 [14,] 173.876722 1 4.26372477 [15,] 173.887213 3 5.41762655 [16,] 173.913685 8 5.88150971 [17,] 173.918930 9 5.96484086 [18,] 173.929563 11 303.66543861 [19,] 173.934825 12 84.59945543 [20,] 173.940095 12 605.73176706 [21,] 173.945424 11 6.36307221 [22,] 173.956081 9 5.70131417 [23,] 173.961410 8 6.02983589 [24,] 173.987818 3 5.27652486 [25,] 173.998334 1 4.39096504 [26,] 174.003542 1 4.15181332 [27,] 174.014031 3 5.42373303 [28,] 174.040283 8 5.99980235 [29,] 174.045544 9 5.71203188 [30,] 174.056035 11 314.59172537 [31,] 174.061281 12 86.18704138 [32,] 174.066490 12 612.68397437 [33,] 174.071790 11 6.36145497 [34,] 174.082436 9 5.57102183 [35,] 174.087760 8 6.28042794 [36,] 174.114076 3 5.16390051 [37,] 174.124635 1 4.27457893 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.674 -197.820 394.381 0.878 365.955 -364.516 0.877 366.096 [9] -364.646 [1] "plotting CO2 timeseries" [1] "plotting O2 timeseries" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting SP-WT slope correction" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html"