Read 65696 records [1] "Analyzing /scr/raf/stephens/CFDAT/060516a.mr" [1] "Reading in data" Read 16424 records [1] "Approximately 73 jogs" [1] "Fixing CO2 glitches" Read 16424 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder JJ8588" [1] "Position 2 Cylinder CC129271" [1] "Position 3 Cylinder CC42671" [1] "Position 4 Cylinder JJ13623" [1] "Position 5 Cylinder CC129281" [1] "Position 6 Cylinder CA06631" [1] "Position 7 Cylinder CC129295" [1] "Position 8 Cylinder CA01487" [1] "Position 9 Cylinder JJ8550" [1] "Position 10 Cylinder CC129307" [1] "Position 11 Cylinder JJ21201" [1] "Position 12 Cylinder CC129293" [1] "Position 13 Cylinder NA" Read 13 records LIST_KNOWN: CC129271 CC129281 CC129295 CC129307 CC129293 LIST_UNKNOWN: JJ8588 CC42671 JJ13623 CA06631 CA01487 JJ8550 JJ21201 Read 171 records Read 54 records Read 536 records Read 2 items [1] "Skipping initial 224 records." [1] "Processing jog 1 at position 225" [1] "Processing jog 2 at position 450" [1] "Processing jog 3 at position 675" [1] "Processing jog 4 at position 900" [1] "Processing jog 5 at position 1125" [1] "Processing jog 6 at position 1350" [1] "Processing jog 7 at position 1575" [1] "Processing jog 8 at position 1800" [1] "Processing jog 9 at position 2025" [1] "Processing jog 10 at position 2250" [1] "Processing jog 11 at position 2475" [1] "Processing jog 12 at position 2700" [1] "Processing jog 13 at position 2925" [1] "Processing jog 14 at position 3150" [1] "Processing jog 15 at position 3375" [1] "Processing jog 16 at position 3600" [1] "Processing jog 17 at position 3825" [1] "Processing jog 18 at position 4050" [1] "Processing jog 19 at position 4275" [1] "Processing jog 20 at position 4500" [1] "Processing jog 21 at position 4725" [1] "Processing jog 22 at position 4950" [1] "Processing jog 23 at position 5175" [1] "Processing jog 24 at position 5400" [1] "Processing jog 25 at position 5625" [1] "Processing jog 26 at position 5850" [1] "Processing jog 27 at position 6075" [1] "Processing jog 28 at position 6300" [1] "Processing jog 29 at position 6525" [1] "Processing jog 30 at position 6750" [1] "Processing jog 31 at position 6975" [1] "Processing jog 32 at position 7200" [1] "Processing jog 33 at position 7425" [1] "Processing jog 34 at position 7650" [1] "Processing jog 35 at position 7875" [1] "Processing jog 36 at position 8100" [1] "Processing jog 37 at position 8325" [1] "Processing jog 38 at position 8550" [1] "Processing jog 39 at position 8775" [1] "Processing jog 40 at position 9000" [1] "Processing jog 41 at position 9225" [1] "Processing jog 42 at position 9450" [1] "Processing jog 43 at position 9675" [1] "Processing jog 44 at position 9900" [1] "Processing jog 45 at position 10125" [1] "Processing jog 46 at position 10350" [1] "Processing jog 47 at position 10575" [1] "Processing jog 48 at position 10800" [1] "Processing jog 49 at position 11025" [1] "Processing jog 50 at position 11250" [1] "Processing jog 51 at position 11475" [1] "Processing jog 52 at position 11700" [1] "Processing jog 53 at position 11925" [1] "Processing jog 54 at position 12150" [1] "Processing jog 55 at position 12375" [1] "Processing jog 56 at position 12600" [1] "Processing jog 57 at position 12825" [1] "Processing jog 58 at position 13050" [1] "Processing jog 59 at position 13275" [1] "Processing jog 60 at position 13500" [1] "Processing jog 61 at position 13725" [1] "Processing jog 62 at position 13950" [1] "Processing jog 63 at position 14175" [1] "Processing jog 64 at position 14400" [1] "Processing jog 65 at position 14625" [1] "Processing jog 66 at position 14850" [1] "Processing jog 67 at position 15075" [1] "Processing jog 68 at position 15300" [1] "Processing jog 69 at position 15525" [1] "Processing jog 70 at position 15750" [1] "Processing jog 71 at position 15975" [1] "Processing jog 72 at position 16200" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 x2 x1 -0.666 -224.924 2048.822 0.882 365.100 -361.914 0.881 365.234 -361.985 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] X 136.813647 12 5.34622691 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2SCL O2ZERO O2OFF CO2SCL_SIO CO2ZERO_SIO CO2OFF_SIO CO2SCL_GMD CO2ZERO_GMD CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.663 -224.942 677.259 0.882 365.100 -360.852 0.881 365.234 [9] -360.971 [1] "plotting CO2 timeseries" [1] "plotting O2 timeseries" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting SP-WT slope correction" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html"