Read 34568 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/060127b.mr"
[1] "Reading in data"
Read 8642 records
[1] "Approximately  38  jogs"
[1] "Fixing CO2 glitches"
Read 8642 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  JJ22398"
[1] "Position  2    Cylinder  CC129271"
[1] "Position  3    Cylinder  JJ27141"
[1] "Position  4    Cylinder  CC129281"
[1] "Position  5    Cylinder  JJ8623"
[1] "Position  6    Cylinder  JJ8937"
[1] "Position  7    Cylinder  CC129307"
[1] "Position  8    Cylinder  JJ3611"
[1] "Position  9    Cylinder  CC161540"
[1] "Position  10    Cylinder  JJ25191"
[1] "Position  11    Cylinder  CC129293"
[1] "Position  12    Cylinder  JJ21174"
[1] "Position  13    Cylinder  NA"
Read 13 records
LIST_KNOWN: CC129271 CC129281 CC129307 CC161540 CC129293 
LIST_UNKNOWN: JJ27141 JJ8623 JJ8937 JJ3611 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Skipping final  92  records."
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "Processing jog 3 at position 451"
[1] "Processing jog 4 at position 676"
[1] "Processing jog 5 at position 901"
[1] "Processing jog 6 at position 1126"
[1] "Processing jog 7 at position 1351"
[1] "Processing jog 8 at position 1576"
[1] "Processing jog 9 at position 1801"
[1] "Processing jog 10 at position 2026"
[1] "Processing jog 11 at position 2251"
[1] "Processing jog 12 at position 2476"
[1] "Processing jog 13 at position 2701"
[1] "Processing jog 14 at position 2926"
[1] "Processing jog 15 at position 3151"
[1] "Processing jog 16 at position 3376"
[1] "Processing jog 17 at position 3601"
[1] "Processing jog 18 at position 3826"
[1] "Processing jog 19 at position 4051"
[1] "Processing jog 20 at position 4276"
[1] "Processing jog 21 at position 4501"
[1] "Processing jog 22 at position 4726"
[1] "Processing jog 23 at position 4951"
[1] "Processing jog 24 at position 5176"
[1] "Processing jog 25 at position 5401"
[1] "Processing jog 26 at position 5626"
[1] "Processing jog 27 at position 5851"
[1] "Processing jog 28 at position 6076"
[1] "Processing jog 29 at position 6301"
[1] "Processing jog 30 at position 6526"
[1] "Processing jog 31 at position 6751"
[1] "Processing jog 32 at position 6976"
[1] "Processing jog 33 at position 7201"
[1] "Processing jog 34 at position 7426"
[1] "Processing jog 35 at position 7651"
[1] "Processing jog 36 at position 7876"
[1] "Processing jog 37 at position 8101"
[1] "Processing jog 38 at position 8326"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -0.649  -198.954  3147.986     0.887   367.070  -363.260     0.887   367.205 
          
 -363.314 
[1] "Screened jogs for high CO2 standard deviation:"
           [,1] [,2]         [,3]
[1,] 27.5323511    3 0.0211177262
[2,] 27.6076247    6 0.0443227964
[3,] 27.6129926    5 0.0505000502
[4,] 27.6505263    5 0.0427856398
[5,] 27.6558932    6 0.0515326740
[6,] 27.7041637    6 0.0544779306
[7,] 27.7095319    5 0.0511117884
[1] "Screened jogs for high O2 standard deviation:"
            [,1] [,2]       [,3]
 [1,] 27.5323511    3 4.56382754
 [2,] 27.5431379    3 4.11801054
 [3,] 27.5539790    5 4.64006515
 [4,] 27.5593492    6 5.68242637
 [5,] 27.5700852    8 6.22591298
 [6,] 27.5968886    8 6.41122519
 [7,] 27.6076247    6 5.95843477
 [8,] 27.6129926    5 5.15416073
 [9,] 27.6237274    3 4.20058039
[10,] 27.6397927    3 4.49921761
[11,] 27.6505263    5 4.92657553
[12,] 27.6558932    6 6.30687785
[13,] 27.6666280    8 6.40835777
[14,] 27.6934279    8 6.47948104
[15,] 27.7041637    6 5.77047689
[16,] 27.7095319    5 4.88832151
[17,] 27.7202685    3 4.33644120
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]   -0.648 -199.316  925.839    0.887  367.067 -361.895    0.887  367.202
[9] -362.012
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "co2 flushing effect zero adjustment fit did not converge for pos 2"
[1] "plotting O2 flushing effect"
[1] "o2 flushing effect zero adjustment fit did not converge for pos 2"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting o2 rollover"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"