Read 66736 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/051116a.mr"
[1] "Reading in data"
Read 16684 records
[1] "Approximately  74  jogs"
[1] "Fixing CO2 glitches"
Read 16684 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  ND20050"
[1] "Position  2    Cylinder  CC129271"
[1] "Position  3    Cylinder  ND20887"
[1] "Position  4    Cylinder  CC129281"
[1] "Position  5    Cylinder  CC129295"
[1] "Position  6    Cylinder  ND19681"
[1] "Position  7    Cylinder  CC129307"
[1] "Position  8    Cylinder  ND19273"
[1] "Position  9    Cylinder  CC161540"
[1] "Position  10    Cylinder  ND19517"
[1] "Position  11    Cylinder  CC129293"
[1] "Position  12    Cylinder  ND19529"
[1] "Position  13    Cylinder  NA"
Read 13 records
LIST_KNOWN: ND20050 ND20887 ND19681 ND19273 ND19517 ND19529 
LIST_UNKNOWN: CC129271 CC129281 CC129295 CC129307 CC161540 CC129293 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 226"
[1] "**************** missing data at  226"
[1] "Processing jog 3 at position 260"
[1] "Processing jog 4 at position 485"
[1] "Processing jog 5 at position 710"
[1] "Processing jog 6 at position 935"
[1] "Processing jog 7 at position 1160"
[1] "Processing jog 8 at position 1385"
[1] "Processing jog 9 at position 1610"
[1] "Processing jog 10 at position 1835"
[1] "Processing jog 11 at position 2060"
[1] "Processing jog 12 at position 2285"
[1] "Processing jog 13 at position 2510"
[1] "Processing jog 14 at position 2735"
[1] "Processing jog 15 at position 2960"
[1] "Processing jog 16 at position 3185"
[1] "Processing jog 17 at position 3410"
[1] "Processing jog 18 at position 3635"
[1] "Processing jog 19 at position 3860"
[1] "Processing jog 20 at position 4085"
[1] "Processing jog 21 at position 4310"
[1] "Processing jog 22 at position 4535"
[1] "Processing jog 23 at position 4760"
[1] "Processing jog 24 at position 4985"
[1] "Processing jog 25 at position 5210"
[1] "Processing jog 26 at position 5435"
[1] "Processing jog 27 at position 5660"
[1] "Processing jog 28 at position 5885"
[1] "Processing jog 29 at position 6110"
[1] "Processing jog 30 at position 6335"
[1] "Processing jog 31 at position 6560"
[1] "Processing jog 32 at position 6785"
[1] "Processing jog 33 at position 7010"
[1] "Processing jog 34 at position 7235"
[1] "Processing jog 35 at position 7460"
[1] "Processing jog 36 at position 7685"
[1] "Processing jog 37 at position 7910"
[1] "Processing jog 38 at position 8135"
[1] "Processing jog 39 at position 8360"
[1] "Processing jog 40 at position 8585"
[1] "Processing jog 41 at position 8810"
[1] "Processing jog 42 at position 9035"
[1] "Processing jog 43 at position 9260"
[1] "Processing jog 44 at position 9485"
[1] "Processing jog 45 at position 9710"
[1] "Processing jog 46 at position 9935"
[1] "Processing jog 47 at position 10160"
[1] "Processing jog 48 at position 10385"
[1] "Processing jog 49 at position 10610"
[1] "Processing jog 50 at position 10835"
[1] "Processing jog 51 at position 11060"
[1] "Processing jog 52 at position 11285"
[1] "Processing jog 53 at position 11510"
[1] "Processing jog 54 at position 11735"
[1] "Processing jog 55 at position 11960"
[1] "Processing jog 56 at position 12185"
[1] "Processing jog 57 at position 12410"
[1] "Processing jog 58 at position 12635"
[1] "Processing jog 59 at position 12860"
[1] "Processing jog 60 at position 13085"
[1] "Processing jog 61 at position 13310"
[1] "Processing jog 62 at position 13535"
[1] "Processing jog 63 at position 13760"
[1] "Processing jog 64 at position 13985"
[1] "Processing jog 65 at position 14210"
[1] "Processing jog 66 at position 14435"
[1] "Processing jog 67 at position 14660"
[1] "Processing jog 68 at position 14885"
[1] "Processing jog 69 at position 15110"
[1] "Processing jog 70 at position 15335"
[1] "Processing jog 71 at position 15560"
[1] "Processing jog 72 at position 15785"
[1] "Processing jog 73 at position 16010"
[1] "Processing jog 74 at position 16235"
[1] "Processing jog 75 at position 16460"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -0.653  -304.317  2348.745     0.963   379.836  -380.177     0.962   379.989 
          
 -380.216 
[1] "Screened jogs for high CO2 standard deviation:"
         [,1] [,2]         [,3]
x2 320.595854    7 0.0251085091
[1] "Screened jogs for high O2 standard deviation:"
           [,1] [,2]        [,3]
[1,] 320.367029    2 77.64200584
[2,] 320.374028    2  4.14168209
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]   -0.653 -304.764  809.603    0.963  379.834 -378.705    0.962  379.986
[9] -378.825
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "plotting CO2 flushing effect"
[1] "plotting O2 flushing effect"
[1] "o2 flushing effect zero adjustment fit did not converge for pos 9"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting co2 rollover"
[1] "plotting o2 switching times"
[1] "plotting o2 rollover"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"